Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 414 a.a., ABC-type antimicrobial peptide transport system, permease component from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  120 bits (302), Expect = 6e-32
 Identities = 114/421 (27%), Positives = 190/421 (45%), Gaps = 53/421 (12%)

Query: 12  RNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPS----Q 67
           R+I   + +++LT + I IGI A+V +++   G++  I E  S  GA+   V       Q
Sbjct: 12  RSIKSNRLRTILTGLIIAIGITALVGMLTAIDGMKAQIEESFSGLGANNFDVRSKNTSGQ 71

Query: 68  QITSIAMS-KNFNDRDLKAVEDVR------GVDVVLYGWFGGTQVTYHDQEYYSSVFATK 120
           ++T   ++ K F     K   D R      G+  V     G T+V    +        T 
Sbjct: 72  RVTRSGVTEKQFKPVSYKDALDFRKGYSSRGMATVSTRVSGSTEVKRGSE-------ITN 124

Query: 121 SSTYQIFFTEAY----GYELEKGRWMKDSD----KYTCVIGYSLAHDTF-DREIDIGDKI 171
            +   I   E Y    G  +E+GR   + +       C+IG  +    F   E  +G  +
Sbjct: 125 PNVRIIGVDENYVLIKGQNIEEGRNFSNVEIEYGNNVCLIGSEIVELLFKSHENPVGAYV 184

Query: 172 EINDKKYKVVGILEQIGNPDDDN----SIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVT 227
                +Y +VG+LE+ G+  +D+    +I+IP E AS +      +    V   D   + 
Sbjct: 185 SFFGNRYSIVGVLEEQGSVGNDSGVDRTILIPVENASRLDQTGGFWYTITVSTSDPTKME 244

Query: 228 -----------KVSEDIEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGIS 276
                      KV ED   EL+      +F V+ +  + ES+  +   L I   G+  I+
Sbjct: 245 YEMGQATGLMRKVREDRVGELD------SFEVVKSNNVGESLEEVAGYLRIGGFGIGFIT 298

Query: 277 LLVGAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGI 336
           LL  +VG+ N M +S+ ER ++IGI KALGA    I   F++EA  + + GG+ G ++G+
Sbjct: 299 LLGASVGLMNIMLVSVTERTREIGIRKALGATPKRIRQQFLIEAIVICIMGGVFGVLVGM 358

Query: 337 LIAKAIEYVAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRG 396
            I   +       G+ +   W+    ++ VL     VG++SG  PA   +KL+P++ LR 
Sbjct: 359 GIGNIVASFVGPGGFLVPWLWMLLAFMICVL-----VGLVSGVIPAIKASKLDPIEALRY 413

Query: 397 E 397
           E
Sbjct: 414 E 414