Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 415 a.a., ABC-type antimicrobial peptide transport system, permease component from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  120 bits (300), Expect = 9e-32
 Identities = 108/417 (25%), Positives = 202/417 (48%), Gaps = 46/417 (11%)

Query: 9   FAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITV----- 63
           FA + +    T+++L+++G+ IGI AI+++ +L   ++  I    S  G +V+ V     
Sbjct: 13  FALQALRSNLTRTVLSLLGVTIGIFAIIAVFTLVDSLEKNIKSSFSFLGTNVLRVDRFPF 72

Query: 64  ------YPSQQITSIAMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVF 117
                 YP  +      +       LK  E ++  + +         +     +  SS F
Sbjct: 73  SSGPGEYPWWRYFRRPPANYSEFVFLK--ERLKNAEAITISASASATL-----KRGSSSF 125

Query: 118 ATKSSTYQIF-FTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREIDIGDKIE 172
              +    +F   E Y   +  GR+  + +    +   V+G  +A+  F     IG +++
Sbjct: 126 EGANLEGVVFDHKEVYDVPVVDGRFFTELEITAARNVTVLGAKIANALFPEGDAIGKEMK 185

Query: 173 INDKKYKVVGILEQIGN-----PDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVT 227
           I  +K+ V+G+LE+ G      P  D++ +IP+ +  +++ +   + +       G D  
Sbjct: 186 IKGQKFMVIGLLEEEGEGLFDLPSKDDACLIPFGSFGKMYYLG-RWGIEPTIAAKGMDSD 244

Query: 228 KVSEDIEDE----LEDSRG-----DENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLL 278
           +    +E+E    L   RG     +++F++  +E +  +I +IF V++I    + G S+L
Sbjct: 245 RGLIALENEMTGLLRGKRGLKPTEEDDFALNKSEFIQNAIGAIFDVISIAGAVIGGFSIL 304

Query: 279 VGAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILI 338
           VG  GI+N M +S+ ER   IGI K+LGA+N  IL  F+ E+ FL LFGG+ G +L    
Sbjct: 305 VGGFGIANIMFVSVRERTNIIGIQKSLGAKNYFILLQFLFESTFLSLFGGLTGLVL---- 360

Query: 339 AKAIEYVAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
             AI ++      G +  ++S + +   +  S V+G+LSG  PA   A+++PV+ +R
Sbjct: 361 VFAITFIP----LGSLEIFMSAKNMALGIGLSMVIGMLSGVVPAGIAARMDPVEAIR 413