Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  178 bits (451), Expect = 3e-49
 Identities = 117/403 (29%), Positives = 215/403 (53%), Gaps = 28/403 (6%)

Query: 12  RNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQITS 71
           R I++   +S LT++G+VIG+ A+++++++G G    +  E+S+ G +++ V P Q    
Sbjct: 11  RAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQFGPG 70

Query: 72  IAMS--KNFNDRDLKAVED-VRGVDVVL-YGWFGGTQVTYHDQEYYSSVFATKSSTYQIF 127
            A +  K F+DRD++A+ + + G+  V          V +  + + +SV  T +      
Sbjct: 71  RASTEAKRFDDRDVEAIRNQISGIRAVAPQNRSSAATVIFGGKNHQTSVIGTTND----- 125

Query: 128 FTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREIDIGDKIEINDKKYKVVGI 183
           +  A  + +  GR  + ++    +  C+IG ++  + F  E  +G  I +++    V+G+
Sbjct: 126 YLIAQDWTIALGRDFQPAEDRGGQIGCIIGETVRQELFGAENPVGQTIRVSNISCPVIGV 185

Query: 184 LEQIGNP----DDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDIEDELED 239
           L + G      D D++I++P +            +  MV  +DG    KV  D+++ L +
Sbjct: 186 LARKGQSGLGDDQDDTIIMPLKIHQRRIGGTTTISSIMVSAQDGVSTAKVQSDLQNLLRE 245

Query: 240 SRG-----DENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILE 294
            R      +++F+V    Q+A +++   ++LT  L  VA +SLLVG +GI N M +S+ E
Sbjct: 246 RRRINIGREDDFTVNDMTQIASAMTGTTTLLTGLLGAVAAVSLLVGGIGIMNIMLVSVTE 305

Query: 295 RRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYGLI 354
           R ++IGI  A+GA    +L+ F+VEA  L  FGGIVG + G+ +A ++  V+ ++    +
Sbjct: 306 RTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTGLGLAYSV--VSFLN----V 359

Query: 355 RAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
               S  +I     FS  +G++ GYFPAR  A L+P++ LR E
Sbjct: 360 PFVTSPSIIFLAFAFSAAIGVIFGYFPARRAASLSPIEALRHE 402