Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 698 a.a., glycine betaine ABC transporter, ATPase/permease fusion protein from Pseudomonas putida KT2440

 Score =  127 bits (318), Expect = 2e-33
 Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 13/253 (5%)

Query: 274 VEVKDELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAA 333
           V + D  L+   V KRY         AV+ +++++   E+  L+G SG+GK+TL + +  
Sbjct: 28  VSIHDIALEFRAVTKRYEGSRSDSTNAVEQVNLAVRRGEVLCLMGTSGSGKSTLLRHVNR 87

Query: 334 VIPPSKGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGL 393
           +I PS G     L D  V  +   P  R    + IGM+FQ + L PHR++L N+  ++ L
Sbjct: 88  LIEPSSGEV---LIDGEVLSSLTQPTLRQLRSQRIGMVFQHFGLLPHRSVLDNV--ALPL 142

Query: 394 EMPGEFAKMKAEHTLVSVGFTEEEAENML---EKHPSELSVGEKHRVALAQVLIREPHLI 450
           E+ GE      E T  +    + +A  +    E+ P ELS G + RV LA+ L+  P ++
Sbjct: 143 ELRGE-----PESTRRTAALRQLQAVGLKAWSERFPHELSGGMQQRVGLARALVTNPDIL 197

Query: 451 LLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKT 510
           L+DEP   +DP  R  +     +   E   T ++V+HD    L + DR A++RGG++I+ 
Sbjct: 198 LMDEPFSALDPTIRRDLQGRFLQLVRERGITTLLVTHDPGEALRLADRIAVLRGGRLIQV 257

Query: 511 GKPDEIVKILSEE 523
           G P E+++  ++E
Sbjct: 258 GTPGELLEHPADE 270



 Score = 75.1 bits (183), Expect = 8e-18
 Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 35/263 (13%)

Query: 2   LLLEVKNVSKSY-----GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYE 56
           + LE + V+K Y       T  ++ V+  +  G+V+ ++G SG+GKS LL  +  +   E
Sbjct: 33  IALEFRAVTKRYEGSRSDSTNAVEQVNLAVRRGEVLCLMGTSGSGKSTLLRHVNRL--IE 90

Query: 57  PTSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIML 116
           P+SG+++                  G+     T+   + +             ++I ++ 
Sbjct: 91  PSSGEVLID----------------GEVLSSLTQPTLRQLR-----------SQRIGMVF 123

Query: 117 QRTFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQ 176
           Q  F L   ++V +N+   L   G         AL  ++ V L+        +LSGG +Q
Sbjct: 124 QH-FGLLPHRSVLDNVALPLELRGEPESTRRTAALRQLQAVGLKAWSERFPHELSGGMQQ 182

Query: 177 RVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEEL 236
           RV LAR +  NP I L DEP   LDP   + +     + V +  I  ++ +H P     L
Sbjct: 183 RVGLARALVTNPDILLMDEPFSALDPTIRRDLQGRFLQLVRERGITTLLVTHDPGEALRL 242

Query: 237 CQKAIWLDKGEMRLVGESKHVVE 259
             +   L  G +  VG    ++E
Sbjct: 243 ADRIAVLRGGRLIQVGTPGELLE 265