Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 531 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  156 bits (395), Expect = 2e-42
 Identities = 139/548 (25%), Positives = 260/548 (47%), Gaps = 63/548 (11%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSV-LLHMLRGMEGYEPTSG 60
           +LLEV ++  ++G  EV+  ++F +  G+ + ++G SG+GK+V  L +LR +   E  SG
Sbjct: 1   MLLEVSDLRVAFGGQEVVHGINFAIRAGEKLALVGESGSGKTVSALSLLRLVHNAE-VSG 59

Query: 61  QIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTF 120
           + +                  G+     +E   + V     +E+    ++ ++       
Sbjct: 60  RALLQ----------------GRDLLALSERQLRGV---RGDEVAVVFQEPMS------- 93

Query: 121 ALYGEKTVAENIMEALTAA-GYEGKDATEWALNLIKMVKLEH---RVAHISRDLSGGEKQ 176
           AL    TV + I E L    G   + A   +  L+    +     R       LSGG++Q
Sbjct: 94  ALNPLYTVGDQIREVLQLKKGLTARQAVAASHELLASTGIPEPARRADAFPHQLSGGQRQ 153

Query: 177 RVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEEL 236
           R ++A  +A  P + LADEPT  LD      + + L +   +H +A+++ +H   ++   
Sbjct: 154 RAMIAMALASAPKLLLADEPTTALDVSLRVQILDLLADLQRQHGMAVLLITHDLNLVRRF 213

Query: 237 CQKAIWLDKG---EMRLVGESKHVVEE--FMKTVTSMKEFEKVE--VKDE---LLKLENV 286
             +   +++G   E   VG+     E     K + S  E +  E  V+D+   +L+ + +
Sbjct: 214 ADRIAVMERGHLVEQGGVGDVFAAPEHPYTRKLLASKPERDVAEPVVRDDAAPVLRSQGL 273

Query: 287 EKRYVS--------VDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPS 338
              Y            +G   AV G D++I   +  G++G SG+GK+TL+ + A  + P 
Sbjct: 274 RVTYPVGLPGFRGWFRKGEFVAVKGADMAIAPGQTLGVIGESGSGKSTLA-LAALGLLPH 332

Query: 339 KGNYEFRLADEWVDMTKVGPLYRGRAKRY-IGMLFQE--YSLYPHRTILYNLTESIGLEM 395
           +G+ +    D W    K G   RGRA R  I ++FQ+   SL P  T+   + E + +  
Sbjct: 333 QGSLQIDGTD-WAKAKKAG---RGRALRQRIQVVFQDPFSSLSPRLTVEQIVGEGLQVHQ 388

Query: 396 PGEFAKMKAEHT---LVSVGFTE--EEAENMLEKHPSELSVGEKHRVALAQVLIREPHLI 450
           P      + E     L  VG  +  E   + L+++P E S G++ R+A+A+ LI +P L+
Sbjct: 389 PALSVAQRRERVVAALADVGLVDDPERGGDWLQRYPHEFSGGQRQRLAIARALIVDPQLL 448

Query: 451 LLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKT 510
           +LDEPT  +D   + QV   +Q+ + E   +Y++++HD+D +  +     +++ G ++++
Sbjct: 449 VLDEPTSALDVTVQKQVLSLLQRLQRERGLSYLLITHDVDVIHAMAHEVMVMKDGAVVES 508

Query: 511 GKPDEIVK 518
           G  D +++
Sbjct: 509 GPVDRVLR 516