Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 913 a.a., ABC-type multidrug transport system, permease component from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  126 bits (317), Expect = 3e-33
 Identities = 126/544 (23%), Positives = 232/544 (42%), Gaps = 91/544 (16%)

Query: 5   EVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQII- 63
           +++ VS+ YG T  L N++ ++    ++G++G  G GKS LL ++ G    E   G +I 
Sbjct: 14  QLEGVSQHYGKTVALNNITLDIPARSMVGLIGPDGVGKSSLLSLISGARVIE--QGNVIV 71

Query: 64  ---------YHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAI 114
                    +    CP    +  P  +GK                               
Sbjct: 72  LGGDMRDAKHRRDVCPRIAWM--PQGLGKN------------------------------ 99

Query: 115 MLQRTFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGE 174
                  LY   +V EN+       G++  +       L+    L       +  LSGG 
Sbjct: 100 -------LYHTLSVYENVDFFARLFGHDKAEREARITELLNSTGLAPFRDRPAGKLSGGM 152

Query: 175 KQRVVLARQIAKNPVIFLADEPTGTLDPKT-AKFVHNALTEAVIKHNIAMVITSHWPEVI 233
           KQ++ L   +  +P + + DEPT  +DP + A+F     +    + N+++++ + + E  
Sbjct: 153 KQKLGLCCALIYDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQTNMSVLVATAYMEEA 212

Query: 234 EELCQKAIWLDKGEMRLVGESK------HVVEEFMKTVTSMKEFEKVEVKDELLKLENVE 287
           E      + ++ GE+   G ++      H        +  + E ++   K  ++   + E
Sbjct: 213 ERF-DWLVAMNAGEILATGSAQQLRAKTHSATLEQAFIALLPEAQRQAHKPVVIPPYHAE 271

Query: 288 KRYVSVDR-------GIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKG 340
           +  ++++        G   AVD ++  I   EIFG +G +G GK+T  K++  ++P S+G
Sbjct: 272 QEEIAIEAKDLTMRFGKFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEG 331

Query: 341 NYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGL------E 394
             +  L  + VD   +        +R +G + Q +SLY   T+  NL     L      E
Sbjct: 332 --QAWLFGQPVDPNDID------TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPPAE 383

Query: 395 MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDE 454
           +P   A+M     L        E E+ L   P+ L +G + R++LA  +I  P +++LDE
Sbjct: 384 IPARVAQMIERFMLT-------EVEDTL---PASLPLGIRQRLSLAVAVIHRPEMLILDE 433

Query: 455 PTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPD 514
           PT  +DP+ R+   + +    S  D+  + +S         CDR +L+  GK++ +G P 
Sbjct: 434 PTSGVDPVARDMFWQ-LMVDLSRQDKVTIFISTHFMNEAERCDRMSLMHAGKVLASGTPQ 492

Query: 515 EIVK 518
           E+V+
Sbjct: 493 ELVQ 496



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 36/259 (13%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQ 61
           + +E K+++  +G    + +V+F +  G++ G LG +G GKS  + ML G+         
Sbjct: 275 IAIEAKDLTMRFGKFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGL--------- 325

Query: 62  IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
                           P+  G     +     + VD    N+I    ++++  M Q  F+
Sbjct: 326 ---------------LPASEG-----QAWLFGQPVD---PNDID--TRRRVGYMSQ-AFS 359

Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLA 181
           LY E TV +N+            +       +I+   L      +   L  G +QR+ LA
Sbjct: 360 LYNELTVRQNLELHARLFHIPPAEIPARVAQMIERFMLTEVEDTLPASLPLGIRQRLSLA 419

Query: 182 RQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAI 241
             +   P + + DEPT  +DP         + +   +  + + I++H+    E  C +  
Sbjct: 420 VAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAER-CDRMS 478

Query: 242 WLDKGEMRLVGESKHVVEE 260
            +  G++   G  + +V++
Sbjct: 479 LMHAGKVLASGTPQELVQQ 497