Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 529 a.a., Putative ABC transporter ATP-binding protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  136 bits (342), Expect = 2e-36
 Identities = 128/545 (23%), Positives = 244/545 (44%), Gaps = 67/545 (12%)

Query: 3   LLEVKNVSKSYGDTE----VLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPT 58
           LL ++N+S  +   +    V+  +S ++N G+ + ++G SG+GKSV    +  +    P 
Sbjct: 5   LLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPPA 64

Query: 59  ---SGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIM 115
              SG I +H     H          G K     +    S++        + L+K++  +
Sbjct: 65  VYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLN------PLHTLEKQLYEV 118

Query: 116 LQRTFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEK 175
           L     +  E   AE I                  L+ + + +   R+      LSGGE+
Sbjct: 119 LSLHRGMSREAARAEMI----------------GCLDRVGIRQASQRLRDYPHQLSGGER 162

Query: 176 QRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEE 235
           QRV++A  +   P + +ADEPT  LD      + + L E   + N+ ++  +H   ++++
Sbjct: 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKK 222

Query: 236 LCQKAIWLDKGEM-------RLVGESKHVVEEFMKTVTSMKEFEKVEVKDELLKLENVEK 288
           L      +  G+         L+    H   +  K + S    + V +      L  V+K
Sbjct: 223 LADSVAVMQHGKCVENQRADTLLSAPTHPYTQ--KLLNSEPTGDPVPLPAGQAPLLEVDK 280

Query: 289 RYVS--VDRGIVK-------AVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSK 339
             V+  + +GI+K        V+ I  +++  E  GLVG SG+GK+T    +  +I  S+
Sbjct: 281 LRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLRLIR-SE 339

Query: 340 GNYEFRLADEWVDMTKVGPLYRGR---AKRYIGMLFQE--YSLYPHRTILYNLTESIGLE 394
           G   F       D   +  L R +    +  I ++FQ+   SL P   +L  + E + + 
Sbjct: 340 GRIVF-------DGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH 392

Query: 395 MP---GEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLIL 451
            P   G   + + +  ++ VG   E       ++P+E S G++ R+A+A+ LI +P LI+
Sbjct: 393 QPTLSGAQREQQVKAVMMEVGLDPETRH----RYPAEFSGGQRQRIAVARALILKPSLII 448

Query: 452 LDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTG 511
           LDEPT ++D   + Q+   ++  + +    Y+ +SHD+  V  +C +  ++R G++++ G
Sbjct: 449 LDEPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG 508

Query: 512 KPDEI 516
           + + +
Sbjct: 509 QCERV 513



 Score = 91.3 bits (225), Expect = 8e-23
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 11/245 (4%)

Query: 280 LLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSK 339
           LL +EN+   +    + +   V+ I + +N  E   LVG SG+GK+  +  I  ++P   
Sbjct: 5   LLAIENLSVGFRQ-QQHVRPVVNAISLQVNAGETLALVGESGSGKSVTALSILRLLPTPP 63

Query: 340 GNY---EFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIGLE 394
             Y   + R   E +       L RG     I M+FQE   SL P  T+   L E + L 
Sbjct: 64  AVYLSGDIRFHGESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH 122

Query: 395 --MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILL 452
             M  E A+ +    L  VG    +A   L  +P +LS GE+ RV +A  L+  P L++ 
Sbjct: 123 RGMSREAARAEMIGCLDRVGI--RQASQRLRDYPHQLSGGERQRVMIAMALLTRPELLIA 180

Query: 453 DEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGK 512
           DEPT  +D   + Q+   +++ + EL+   + ++H++  V  + D  A+++ GK ++  +
Sbjct: 181 DEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLSIVKKLADSVAVMQHGKCVENQR 240

Query: 513 PDEIV 517
            D ++
Sbjct: 241 ADTLL 245