Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 911 a.a., fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein (NCBI) from Escherichia coli BW25113

 Score =  129 bits (323), Expect = 6e-34
 Identities = 134/538 (24%), Positives = 238/538 (44%), Gaps = 79/538 (14%)

Query: 5   EVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQII- 63
           ++  VS+ YG T  L N++ ++    ++G++G  G GKS LL ++ G    E  +  ++ 
Sbjct: 14  QLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVMVLG 73

Query: 64  -------YHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIML 116
                  +    CP    +  P  +GK     T  V ++VDF+                 
Sbjct: 74  GDMRDPKHRRDVCPRIAWM--PQGLGKNLY-HTLSVYENVDFFAR--------------- 115

Query: 117 QRTFALYG-EKTVAE-NIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGE 174
                L+G +K   E  I E LT+ G               +     R A     LSGG 
Sbjct: 116 -----LFGHDKAEREVRINELLTSTG---------------LAPFRDRPAG---KLSGGM 152

Query: 175 KQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKH-NIAMVITSHWPEVI 233
           KQ++ L   +  +P + + DEPT  +DP +     + +     +  N+++++ + + E  
Sbjct: 153 KQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSVLVATAYMEEA 212

Query: 234 EELCQKAIWLDKGEMRLVG---------ESKHVVEEFMKTVTSMKEFEKVEVKDELLKLE 284
           E      + ++ GE+   G         +S  + E F+  +   +      V     + E
Sbjct: 213 ERF-DWLVAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPE 271

Query: 285 N----VEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKG 340
           N    +E R +++  G   AVD ++  I   EIFG +G +G GK+T  K++  ++P S+G
Sbjct: 272 NAEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEG 331

Query: 341 NYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLEMPGEFA 400
             E  L  + VD   +        +R +G + Q +SLY   T+  NL     L    E A
Sbjct: 332 --EAWLFGQPVDPKDID------TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPE-A 382

Query: 401 KMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMD 460
           ++ A    +S  F   + E++L   P  L +G + R++LA  +I  P +++LDEPT  +D
Sbjct: 383 EIPARVAEMSERFKLNDVEDIL---PESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVD 439

Query: 461 PITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVK 518
           P+ R+   + +    S  D+  + +S         CDR +L+  GK++ +G P E+V+
Sbjct: 440 PVARDMFWQ-LMVDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVE 496



 Score = 58.9 bits (141), Expect = 8e-13
 Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 36/259 (13%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQ 61
           + +E ++++  +G    + +V+F +  G++ G LG +G GKS  + ML G+         
Sbjct: 275 IAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGL--------- 325

Query: 62  IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
                           P+  G+          K +D           ++++  M Q  F+
Sbjct: 326 ---------------LPASEGEAWLFGQPVDPKDID----------TRRRVGYMSQ-AFS 359

Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLA 181
           LY E TV +N+            +       + +  KL      +   L  G +QR+ LA
Sbjct: 360 LYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLA 419

Query: 182 RQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAI 241
             +   P + + DEPT  +DP         + +   +  + + I++H+    E  C +  
Sbjct: 420 VAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAER-CDRIS 478

Query: 242 WLDKGEMRLVGESKHVVEE 260
            +  G++   G  + +VE+
Sbjct: 479 LMHAGKVLASGTPQELVEK 497