Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECRC62

 Score =  129 bits (324), Expect = 5e-34
 Identities = 136/536 (25%), Positives = 239/536 (44%), Gaps = 75/536 (13%)

Query: 5   EVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIY 64
           ++  VS+ YG T  L N++ ++    ++G++G  G GKS LL ++ G    E  +  ++ 
Sbjct: 14  QLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVMVLG 73

Query: 65  HVAYCPH-----CENVE-APSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQR 118
                P      C  +   P  +GK     T  V ++VDF+                   
Sbjct: 74  GDMRDPRHRRDACPRIAWMPQGLGKNLY-HTLSVYENVDFFAR----------------- 115

Query: 119 TFALYG-EKTVAE-NIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQ 176
              L+G +K   E  I E LT+ G               +     R A     LSGG KQ
Sbjct: 116 ---LFGHDKAEREVRINELLTSTG---------------LAPFRDRPAG---KLSGGMKQ 154

Query: 177 RVVLARQIAKNPVIFLADEPTGTLDPKT-AKFVHNALTEAVIKHNIAMVITSHWPEVIEE 235
           ++ L   +  +P + + DEPT  +DP + A+F     +    + N+++++ + + E  E 
Sbjct: 155 KLGLCCALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAER 214

Query: 236 LCQKAIWLDKGEMRLVG---------ESKHVVEEFMKTVTSMKEFEKVEVKDELLKLEN- 285
                + ++ GE+   G         +S  + E F+  +   +      V     + EN 
Sbjct: 215 F-DWLVAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENA 273

Query: 286 ---VEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNY 342
              +E R +++  G   AVD ++  I   EIFG +G +G GK+T  K++  ++P S+G  
Sbjct: 274 EIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEG-- 331

Query: 343 EFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLEMPGEFAKM 402
           E  L  + VD   +        +R +G + Q +SLY   T+  NL     L    E A++
Sbjct: 332 EAWLFGQPVDPKDID------TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPE-AEI 384

Query: 403 KAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPI 462
            A    +S  F   + E++L   P  L +G + R++LA  +I  P +++LDEPT  +DP+
Sbjct: 385 PARVAEMSERFKLNDVEDIL---PESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPV 441

Query: 463 TRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVK 518
            R+   + +    S  D+  + +S         CDR +L+  GK++ +G P E+V+
Sbjct: 442 ARDMFWQ-LMVDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVE 496



 Score = 58.9 bits (141), Expect = 8e-13
 Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 36/259 (13%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQ 61
           + +E ++++  +G    + +V+F +  G++ G LG +G GKS  + ML G+         
Sbjct: 275 IAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGL--------- 325

Query: 62  IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
                           P+  G+          K +D           ++++  M Q  F+
Sbjct: 326 ---------------LPASEGEAWLFGQPVDPKDID----------TRRRVGYMSQ-AFS 359

Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLA 181
           LY E TV +N+            +       + +  KL      +   L  G +QR+ LA
Sbjct: 360 LYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLSLA 419

Query: 182 RQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAI 241
             +   P + + DEPT  +DP         + +   +  + + I++H+    E  C +  
Sbjct: 420 VAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAER-CDRIS 478

Query: 242 WLDKGEMRLVGESKHVVEE 260
            +  G++   G  + +VE+
Sbjct: 479 LMHAGKVLASGTPQELVEK 497