Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECRC101

 Score =  129 bits (323), Expect = 6e-34
 Identities = 138/540 (25%), Positives = 240/540 (44%), Gaps = 83/540 (15%)

Query: 5   EVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQII- 63
           ++  VS+ YG T  L N++ ++    ++G++G  G GKS LL ++ G    E   G +I 
Sbjct: 14  QLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIE--QGNVIV 71

Query: 64  ---------YHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAI 114
                    +    CP    +  P  +GK     T  V ++VDF+               
Sbjct: 72  LGGDMRDPKHRRDVCPRIAWM--PQGLGKNLY-HTLSVYENVDFFAR------------- 115

Query: 115 MLQRTFALYG-EKTVAE-NIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSG 172
                  L+G +K   E  I E LT+ G               +     R A     LSG
Sbjct: 116 -------LFGHDKAEREVRINELLTSTG---------------LAPFRDRPAG---KLSG 150

Query: 173 GEKQRVVLARQIAKNPVIFLADEPTGTLDPKT-AKFVHNALTEAVIKHNIAMVITSHWPE 231
           G KQ++ L   +  +P + + DEPT  +DP + A+F     +    + N+++++ + + E
Sbjct: 151 GMKQKLGLCCALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYME 210

Query: 232 VIEELCQKAIWLDKGEMRLVG---------ESKHVVEEFMKTVTSMKEFEKVEVKDELLK 282
             E      + ++ GE+   G         +S  + E F+  +   +      V     +
Sbjct: 211 EAERF-DWLVAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQ 269

Query: 283 LEN----VEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPS 338
            EN    +E R +++  G   AVD ++  I   EIFG +G +G GK+T  K++  ++P S
Sbjct: 270 PENAEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPAS 329

Query: 339 KGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLEMPGE 398
           +G  E  L  + VD   +        +R +G + Q +SLY   T+  NL     L    E
Sbjct: 330 EG--EAWLFGQPVDPKDID------TRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPE 381

Query: 399 FAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGT 458
            A++ A    +S  F   + E++L   P  L +G + R++LA  +I  P +++LDEPT  
Sbjct: 382 -AEIPARVAEMSERFKLNDVEDVL---PESLPLGIRQRLSLAVAVIHRPEMLILDEPTSG 437

Query: 459 MDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVK 518
           +DP+ R+   + +    S  D+  + +S         CDR +L+  GK++ +G P E+V+
Sbjct: 438 VDPVARDMFWQ-LMVDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVE 496



 Score = 58.9 bits (141), Expect = 8e-13
 Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 36/259 (13%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQ 61
           + +E ++++  +G    + +V+F +  G++ G LG +G GKS  + ML G+         
Sbjct: 275 IAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGL--------- 325

Query: 62  IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
                           P+  G+          K +D           ++++  M Q  F+
Sbjct: 326 ---------------LPASEGEAWLFGQPVDPKDID----------TRRRVGYMSQ-AFS 359

Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLA 181
           LY E TV +N+            +       + +  KL      +   L  G +QR+ LA
Sbjct: 360 LYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDVLPESLPLGIRQRLSLA 419

Query: 182 RQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAI 241
             +   P + + DEPT  +DP         + +   +  + + I++H+    E  C +  
Sbjct: 420 VAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAER-CDRIS 478

Query: 242 WLDKGEMRLVGESKHVVEE 260
            +  G++   G  + +VE+
Sbjct: 479 LMHAGKVLASGTPQELVEK 497