Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 400 a.a., glycine betaine/proline ABC transporter periplasmic binding protein from Escherichia coli BL21

 Score =  132 bits (332), Expect = 2e-35
 Identities = 72/235 (30%), Positives = 137/235 (58%), Gaps = 9/235 (3%)

Query: 284 ENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNYE 343
           + + K  +    G+   V    ++I E EIF ++G+SG+GK+T+ +++  +I P++G   
Sbjct: 27  QGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG--- 83

Query: 344 FRLADEWVDMTKVGPL-YRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLEMPGEFAKM 402
            ++  + VD+ K+     R   ++ I M+FQ ++L PH T+L N   + G+E+ G  A+ 
Sbjct: 84  -QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT--AFGMELAGINAEE 140

Query: 403 KAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPI 462
           + E  L ++   +   EN    +P ELS G + RV LA+ L   P ++L+DE    +DP+
Sbjct: 141 RREKALDAL--RQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198

Query: 463 TRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIV 517
            R ++ + + K +++  +T V +SHD+D  + + DR A+++ G++++ G PDEI+
Sbjct: 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253



 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 30/240 (12%)

Query: 19  LKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCENVEAP 78
           +K+ S  + EG++  ++G SG+GKS ++ +L  +   EPT GQ++         + V+  
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--IEPTRGQVLI--------DGVD-- 91

Query: 79  SQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFALYGEKTVAENIMEALTA 138
                        +AK  D     E+    +KKIA++ Q +FAL    TV +N    +  
Sbjct: 92  -------------IAKISDA----ELREVRRKKIAMVFQ-SFALMPHMTVLDNTAFGMEL 133

Query: 139 AGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLARQIAKNPVIFLADEPTG 198
           AG   ++  E AL+ ++ V LE+       +LSGG +QRV LAR +A NP I L DE   
Sbjct: 134 AGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFS 193

Query: 199 TLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAIWLDKGEMRLVGESKHVV 258
            LDP     + + L +   KH   +V  SH  +    +  +   +  GE+  VG    ++
Sbjct: 194 ALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253