Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

 Score =  162 bits (410), Expect = 3e-44
 Identities = 137/534 (25%), Positives = 250/534 (46%), Gaps = 65/534 (12%)

Query: 3   LLEVKNVSKSY----GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEP- 57
           LLEV+N+S  +    G  + ++N+S+ ++ G+ + +LG SG+GKSV    +  +    P 
Sbjct: 5   LLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPG 64

Query: 58  --TSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIM 115
             +SG+I+ +                GK      + +  S D  +   +   L   IA++
Sbjct: 65  KISSGEILLN----------------GK------DLLKMSAD--DRRAVNGRL---IAMI 97

Query: 116 LQRTFA-LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKL---EHRVAHISRDLS 171
            Q   + L    TV   + EAL   G + + A   AL L K V L   E  V     + S
Sbjct: 98  FQDPLSHLNPVYTVGWQMREALRTHGIDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFS 157

Query: 172 GGEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPE 231
           GG++QRV++A  +A  P + +ADEPT  LD      V   L E   +  + ++I +H   
Sbjct: 158 GGQRQRVMIAMALALKPNLLIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLG 217

Query: 232 VIEELCQKAIWLDKGEMRLVGESKHV--------VEEFMKTVTSMKEFEKVEVKDE-LLK 282
           V+ E+  + + ++KG +   G  + V         ++ +       +  +     E +LK
Sbjct: 218 VVSEVADRVVVMEKGVLVESGTVREVYRNPQHPYTKKLIAAAPGKGQLHEPSTDGEPILK 277

Query: 283 LENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNY 342
           + N  K Y     G  +A+ GI   +   E   +VG SG+GK+TL++I+  +  P  G  
Sbjct: 278 VRNARKSY-----GGFEALKGISFDLKAGETVAVVGESGSGKSTLARILLRLDDPDSGTA 332

Query: 343 EFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIGLE---MPG 397
            ++      D+  + P    + +R + M+FQ+   SL P  T+   ++E+  +    +P 
Sbjct: 333 HWK----GQDLFTLSPSELFKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPEILPK 388

Query: 398 EFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTG 457
              + +A   L  VG + E     + ++P + S G++ R+A+A+ L  EP LI+ DE   
Sbjct: 389 AKWRARAAELLERVGLSPEH----MGRYPHQFSGGQRQRIAIARALALEPQLIVCDEAVS 444

Query: 458 TMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTG 511
            +D   + QV   + K R E+   ++ ++HD+  V +  D   +++ G++++ G
Sbjct: 445 ALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFG 498



 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 12/248 (4%)

Query: 278 DELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVI-- 335
           D LL++ N+   + +   G VKAV  I   ++  E   ++G SG+GK+  S  I  +I  
Sbjct: 3   DHLLEVRNLSVDFYTAT-GTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDM 61

Query: 336 PPSK-GNYEFRLADEWVDMTKVGPLYRGRAK-RYIGMLFQE--YSLYPHRTILYNLTESI 391
           PP K  + E  L  +  D+ K+    R     R I M+FQ+    L P  T+ + + E++
Sbjct: 62  PPGKISSGEILLNGK--DLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREAL 119

Query: 392 GLE-MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLI 450
               +    A+++A      V   E E    ++K+P E S G++ RV +A  L  +P+L+
Sbjct: 120 RTHGIDNRQAQVEALRLFKRVALPEPE--KAVDKYPHEFSGGQRQRVMIAMALALKPNLL 177

Query: 451 LLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKT 510
           + DEPT  +D   + +V   +++ + E     +I++HD+  V  V DR  ++  G ++++
Sbjct: 178 IADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVES 237

Query: 511 GKPDEIVK 518
           G   E+ +
Sbjct: 238 GTVREVYR 245