Pairwise Alignments
Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2
Subject, 551 a.a., ABC transporter permease from Agrobacterium fabrum C58
Score = 132 bits (331), Expect = 4e-35
Identities = 129/540 (23%), Positives = 236/540 (43%), Gaps = 64/540 (11%)
Query: 4 LEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGME--GYEPTSGQ 61
L+V+ + S ++++ V ++ EG+++ ++G SG+GK+ + L G G + G
Sbjct: 10 LKVEATTDSGRRIQIIRGVDIDIAEGEIVALIGESGSGKTTIALTLMGYARPGCRISGGS 69
Query: 62 IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
+ +E G K YV +S N Q+
Sbjct: 70 VTVAGRDMVQLSEMERAKIRGTKIS----YVPQSAAAAFNPA-------------QKIID 112
Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISR---DLSGGEKQRV 178
E T ++M ++A A+ L K + L + R +SGG+ QR+
Sbjct: 113 QVIEVTRIHDLMPP--------QEARRRAVELFKALSLPNPETIGERYPHQVSGGQLQRL 164
Query: 179 VLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQ 238
A + NP + + DEPT LD T V A A+ K I V SH V+ ++
Sbjct: 165 SAAMALIGNPELVIFDEPTTALDVTTQIEVLRAFKSAMRKGGIGGVYVSHDLAVVAQIAD 224
Query: 239 KAIWLDKGEMRLVGESKHVVE---------------EFMKTVTSMKEFEKVEVKDELLKL 283
+ + L GE++ G + ++E + ++TV +K+ LL +
Sbjct: 225 RIVVLKGGEIQETGTTTDILENAQHPYTRELLTAFNDKVRTVAPLKQ----NGAKPLLDI 280
Query: 284 ENVEKRYVSVDRG---IVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKG 340
E + Y + +V+AVD + +++ G++G SG GK+TL++ IA ++P + G
Sbjct: 281 EKLIAGYGTKGDDHMPLVRAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGILPAASG 340
Query: 341 N--YEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGL--EMP 396
+ +E R D L R + I + + +L P ++I L + +
Sbjct: 341 HVIFEGRQLDADARRRTSDQLRRMQ----IVFQYADTALNPAKSIEDILGRPLAFYHSLK 396
Query: 397 GEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPT 456
G+ + + L V ++ +HPS LS G+K RV A+ L EP LI+ DE T
Sbjct: 397 GKARDARIDQLLDMVKLPR----SVRHRHPSGLSGGQKQRVNFARALAAEPSLIICDEIT 452
Query: 457 GTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEI 516
+D + + + + + + EL+ +Y+ +SHD+ V ++CD ++ GG+ ++ + D I
Sbjct: 453 SALDTVVAAAIIDLLGELQRELNLSYIFISHDLSVVESICDEIVVMYGGQKVEHLETDAI 512
Score = 84.7 bits (208), Expect = 8e-21
Identities = 59/226 (26%), Positives = 112/226 (49%), Gaps = 7/226 (3%)
Query: 298 VKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNYEFRLADEWVDMTKVG 357
++ + G+D+ I E EI L+G SG+GKTT++ + P + DM ++
Sbjct: 22 IQIIRGVDIDIAEGEIVALIGESGSGKTTIALTLMGYARPGCRISGGSVTVAGRDMVQLS 81
Query: 358 PLYRGRAK-RYIGMLFQEYS--LYPHRTILYNLTESIGLE--MPGEFAKMKAEHTLVSVG 412
+ R + + I + Q + P + I+ + E + MP + A+ +A ++
Sbjct: 82 EMERAKIRGTKISYVPQSAAAAFNPAQKIIDQVIEVTRIHDLMPPQEARRRAVELFKALS 141
Query: 413 FTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPITRNQVAESIQ 472
E E++P ++S G+ R++ A LI P L++ DEPT +D T+ +V + +
Sbjct: 142 LPNPETIG--ERYPHQVSGGQLQRLSAAMALIGNPELVIFDEPTTALDVTTQIEVLRAFK 199
Query: 473 KSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVK 518
+ + V VSHD+ V + DR +++GG+I +TG +I++
Sbjct: 200 SAMRKGGIGGVYVSHDLAVVAQIADRIVVLKGGEIQETGTTTDILE 245
Score = 66.6 bits (161), Expect = 2e-15
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 37/254 (14%)
Query: 3 LLEVKNVSKSYGD--------TEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEG 54
LL+++ + YG + +VS + G +G++G SG GKS L + G+
Sbjct: 277 LLDIEKLIAGYGTKGDDHMPLVRAVDSVSLAVYPGRNLGIIGESGCGKSTLARAIAGI-- 334
Query: 55 YEPTSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAI 114
SG +I+ Q+ ++ + +Y +++ K I
Sbjct: 335 LPAASGHVIFEGRQLDADARRRTSDQL-RRMQIVFQYADTALN----------PAKSIED 383
Query: 115 MLQRTFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAH-ISRDLSGG 173
+L R A Y +GK L+ MVKL V H LSGG
Sbjct: 384 ILGRPLAFY---------------HSLKGKARDARIDQLLDMVKLPRSVRHRHPSGLSGG 428
Query: 174 EKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVI 233
+KQRV AR +A P + + DE T LD A + + L E + N++ + SH V+
Sbjct: 429 QKQRVNFARALAAEPSLIICDEITSALDTVVAAAIIDLLGELQRELNLSYIFISHDLSVV 488
Query: 234 EELCQKAIWLDKGE 247
E +C + + + G+
Sbjct: 489 ESICDEIVVMYGGQ 502