Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 352 a.a., recombinase RecA from Pseudomonas simiae WCS417

 Score = 51.2 bits (121), Expect = 2e-11
 Identities = 43/207 (20%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G + K  I +IYGP   GKT + +  + +A + G    ++D E +L  E   +L G + D
Sbjct: 53  GGLPKGRIVEIYGPESSGKTTLTLSVIAQAQKMGATCAFVDAEHALDPEYAGKL-GVNVD 111

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINE-NTKLN- 124
           +LL    + +P + E+  E  + +     + +I++D + +L  + E+  ++ + +  L  
Sbjct: 112 DLL----VSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGDMHVGLQA 167

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKIEKS 179
           R++ + +  +    +  N  ++  NQ++  I  +        GG  L++++   + I ++
Sbjct: 168 RLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRT 227

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
            ++      K      G   R K+++N
Sbjct: 228 GAV------KEGDEVVGSETRVKVVKN 248