Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 348 a.a., Recombinase A from Alteromonas macleodii MIT1002

 Score = 52.8 bits (125), Expect = 8e-12
 Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G +    + +IYGP   GKT + +  + +A   GK   ++D E +L     ++L G + D
Sbjct: 53  GGLPCGRVVEIYGPESSGKTTLTLQVIAEAQRKGKTCAFVDAEHALDPVYAEKL-GVNID 111

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLEL-CDKINENTKLN- 124
           ELL    + +P + E+  E  + +     V ++I+D + +L  + E+  D  + +  L  
Sbjct: 112 ELL----VSQPDTGEQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGDSHVGLQA 167

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKIEKS 179
           R++ + +  L    ++ N+  +  NQ++  I     N     GG  L+++S   ++++  
Sbjct: 168 RLMSQALRKLTANIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSS--VRLD-- 223

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
             IR++   K      G   R K+++N
Sbjct: 224 --IRRIGAVKEGDEVVGNETRVKVVKN 248