Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 363 a.a., RecA protein from Agrobacterium fabrum C58

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 45/207 (21%), Positives = 100/207 (48%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G + K  I +IYGP   GKT + + ++ +A + G    ++D E +L     ++L G D  
Sbjct: 65  GGLPKGRIIEIYGPESSGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKL-GVD-- 121

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENTK--LN 124
             L++++I +P + E+  E  + +     V +++ID + +L  R E+  ++ ++      
Sbjct: 122 --LQSLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAALTPRAEIEGEMGDSLPGLQA 179

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKIEKS 179
           R++ + +  L     +    ++  NQ++  I  +        GG  L++++   ++++  
Sbjct: 180 RLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYAS--VRLD-- 235

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
             IR++   K R    G   R K+++N
Sbjct: 236 --IRRIGAVKEREEVVGNQTRVKVVKN 260