Pairwise Alignments

Query, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 352 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 17/162 (10%)

Query: 59  LKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118
           LK   EDF V+E+       E              G  +   VEK   NT +A ++I +A
Sbjct: 21  LKATAEDFQVDEVLDIPLTGE--------------GEHLWLWVEKRGLNTEEAARRIAKA 66

Query: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCF--GLKKEQLENINIKDIVIRDVQKTNKKLRMGG 176
                +   +AG KD+ A+T Q F     G     +       + I    +  +KL+ G 
Sbjct: 67  AGVPLRTVSYAGLKDRQALTRQWFSVQLPGKADPDMSAAENDTLKILKTARHKRKLQRGA 126

Query: 177 LWGNKFTIKIRDLNLSEKEI-KRISDLKLDYVLNYYGIQRFG 217
              N FT+++  L      I  R+  +    + NY+G QRFG
Sbjct: 127 HSANGFTLRLTQLAGDTAAIDARLQLIAQHGIPNYFGAQRFG 168