Pairwise Alignments

Query, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 352 a.a., tRNA pseudouridine synthase D from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%)

Query: 59  LKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118
           LK   EDF V+E      VL++      E +  W        VEK + NT +A +++ RA
Sbjct: 21  LKAVAEDFQVDE------VLDIPLSGQGEHLWLW--------VEKRDLNTEEAARRLARA 66

Query: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCFGLKKEQLENINIKDIVIRDVQKT--NKKLRMGG 176
                ++  +AG KD+ A+T Q F      K   +    +D  +R +++    +KL+ G 
Sbjct: 67  AGVPVRSISYAGLKDRQALTRQWFSLHLPGKADPDLSRAEDASLRVLKQVRHQRKLQRGA 126

Query: 177 LWGNKFTIKIRDLNLSEKEI-KRISDLKLDYVLNYYGIQRFG 217
              N FT+++  L    + +  R+  L+   V NY+G QRFG
Sbjct: 127 HSANGFTLRLTALAADHQAVDARLEQLRQQGVPNYFGTQRFG 168



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 31/155 (20%)

Query: 298 ALPPQLN--SMFVNAYQAYLFNEMINKRFDYGF--DELEGDILE---------------- 337
           ALP Q N  S  ++A ++YLFN+++  R   G       GD+L                 
Sbjct: 185 ALPEQRNVRSRLLSAGRSYLFNQLLAARVADGSWARAQVGDLLAFTDSRSFFPAGEAECA 244

Query: 338 -------DNTPTGTLIGYDTKFSGGIQGEIEKEIVERENLDLKKFKIEDFGNFYGTRRKM 390
                  D  PTG + G     +GG   ++E  I  R+    +        +    RR +
Sbjct: 245 DPRLAILDLHPTGPMWGEGASPAGGAPAQLENAIGARQPALCQWLAQAGMDH---ERRIL 301

Query: 391 VTPIYDFKSRF-ENEIFELSFKLERGNYATIVTRE 424
             PI      + E +I +L F L  G +AT+V RE
Sbjct: 302 RLPIGGLTWHYPEPDILQLEFVLPAGCFATVVVRE 336