Pairwise Alignments

Query, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 349 a.a., tRNA pseudouridine(13) synthase TruD from Dickeya dianthicola ME23

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 18/164 (10%)

Query: 57  GTLKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIV 116
           G LK  P+DF V E            ++GF       G  +   V K   NT    + + 
Sbjct: 18  GVLKASPDDFFVAE------------DLGF--APDGDGEQVLVRVRKRGCNTTFVAEALA 63

Query: 117 RATKTKRKNFGFAGTKDKFAVTTQRFGCF---GLKKEQLENINIKDIVIRDVQKTNKKLR 173
           +      ++  +AG KD+ AVT Q F C    G  +       ++   I + Q+  +KLR
Sbjct: 64  KFAGIPARSVSYAGLKDRHAVTEQWF-CLHLPGKAEPAWSAFALEGCEILEAQRHRRKLR 122

Query: 174 MGGLWGNKFTIKIRDLNLSEKEIKRISDLKLDYVLNYYGIQRFG 217
           +G L GN F++ +R+++   +   R++ +  + V NY+G QRFG
Sbjct: 123 IGALRGNHFSLVLREVSDRAEVDARLALIAGEGVPNYFGSQRFG 166