Pairwise Alignments

Query, 174 a.a., RNA 2' 3'-cyclic phosphodiesterase from Methanococcus maripaludis S2

Subject, 185 a.a., '2'-5' RNA ligase' transl_table=11 from Sphingobium sp. HT1-2

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 12/178 (6%)

Query: 2   RCFLAIELKTDLKENLEVLKKQFNLKGIKTVEKENLHITVKFLGDIDDKKLEEIVN--SD 59
           R F+AI     ++  L  L +   + G +  +   LH+T++F+G +D  + ++I +  + 
Sbjct: 3   RLFVAIRPPATIRSQL--LAQMAGVPGARWQDDGQLHLTLRFIGQVDRHQADDIADALAG 60

Query: 60  LKIKKVISEIKGVGTFPNEEYIRVIWVGT---TNLQETFKNIDEKLFKLGFKKE-KSYDP 115
           ++ +     + G G F     +  +W G      L      +D      G   E ++Y P
Sbjct: 61  VRFQPFAIALAGAGYFERRGVVDTLWAGVQPRDPLAHLHAKVDRACISAGIAPEARAYLP 120

Query: 116 HITLGRVKFIENDSKETLKKLIEKNKHVNFGKIEINSVSLMKSTLTKNGPVYETVKKW 173
           HITL R      D    +   +  +  +      ++  SL +S L   G  Y  V+ +
Sbjct: 121 HITLARFSRHGGD----IAPFLALHAGLASPAFTVDEFSLYESRLGHAGSSYHAVETY 174