Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 216 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE from Rhodanobacter sp. FW510-T8

 Score =  129 bits (325), Expect = 4e-35
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 3/202 (1%)

Query: 3   KKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQ 62
           K    W+ +  ND Y   A+    RSRA YKL +L E+  L+K    VVDLG APG W Q
Sbjct: 5   KSSAVWLREHFNDEYVKKAQAEGQRSRAVYKLEELIERDRLLKPGINVVDLGAAPGSWSQ 64

Query: 63  AARDIVGEDGFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPE-KPDVIICDA 121
             R+ +G+ G +  +D+  ++ +    +  ++GD  +E +L + +  L   + D+++CD 
Sbjct: 65  LVRNRLGDSGKVFALDILPMQSIA--GVDFLQGDFREESVLHELESRLEGLRVDLVLCDM 122

Query: 122 SPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKA 181
           +PN+SGV   D +R++ L  +AL  + + L+ GG+F++K+FQG  F+ Y++ +   F + 
Sbjct: 123 APNMSGVALADQIRAMGLAELALDFSRQWLRPGGSFLIKLFQGVGFDDYLRSLRADFTRV 182

Query: 182 FTTKPRASRDESAEVYVIGKRF 203
              KP+ASR  S EVY +   F
Sbjct: 183 TMRKPKASRARSREVYALAVGF 204