Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 242 a.a., Ribosomal RNA large subunit methyltransferase E from Xanthobacter sp. DMC5

 Score =  116 bits (291), Expect = 4e-31
 Identities = 70/203 (34%), Positives = 109/203 (53%), Gaps = 5/203 (2%)

Query: 6   KRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAAR 65
           ++W+ ++ ND Y   AKR  +RSRA +KL +++EK  L+K    +VDLG APGGW Q A 
Sbjct: 28  QKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKAKLLKRGLRIVDLGAAPGGWSQVAA 87

Query: 66  DIVGED---GFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKPDVIICDAS 122
             +G +   G IV IDL  + P+P   +   + D    +   +  ++L  + D+++ D +
Sbjct: 88  QKIGLEQGQGKIVAIDLLEMDPIP--GVAFAQMDFLTPDAPGRLMEMLGGQADLVMSDMA 145

Query: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182
            N +G    DH+R + L  +A   A ++L  GG F+ KV QG      +  +   F    
Sbjct: 146 ANATGHKKTDHLRIVGLVELAADFARQVLAPGGAFLAKVIQGGTEGTLLANLKRDFALVR 205

Query: 183 TTKPRASRDESAEVYVIGKRFNG 205
             KP ASR +SAE+YV+   F G
Sbjct: 206 HIKPAASRADSAELYVLATGFRG 228