Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 216 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  145 bits (367), Expect = 5e-40
 Identities = 75/204 (36%), Positives = 124/204 (60%), Gaps = 3/204 (1%)

Query: 3   KKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQ 62
           K   +W+ +  ND Y   A++  YRSRA+YKL +L +K  L +    V+DLG APGGW Q
Sbjct: 5   KTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGWSQ 64

Query: 63  AARDIVGEDGFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLLPEKP-DVIICDA 121
            A  ++G  G ++  D+  +  +P  ++  + GD T++ +L +  + +     D++I D 
Sbjct: 65  VASRLIGGQGRLIASDILEMDSIP--DVTFVHGDFTQDAVLAEILEAVGNSQVDLVISDM 122

Query: 122 SPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKA 181
           +PN+SG+  VD  R++ L  +AL  A ++L+ GG+F+VKVFQG+ F++Y + + + FDK 
Sbjct: 123 APNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHKNIRKLFDKV 182

Query: 182 FTTKPRASRDESAEVYVIGKRFNG 205
              KP +SRD S E Y++ + F G
Sbjct: 183 QMRKPDSSRDRSREQYLLARGFRG 206