Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 209 a.a., 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE from Dickeya dadantii 3937

 Score =  125 bits (314), Expect = 7e-34
 Identities = 75/197 (38%), Positives = 110/197 (55%), Gaps = 9/197 (4%)

Query: 7   RWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARD 66
           RW+ +  +D Y   A+++  RSRA +KL ++ +   L K    VVDLG APGGW Q    
Sbjct: 12  RWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDRLFKPGMTVVDLGAAPGGWSQYVVS 71

Query: 67  IVGEDGFIVGIDLQTVKPLPHDNIIAI---KGDMTKEEILKQAKDLL-PEKPDVIICDAS 122
            +G  G I+  DL     LP D I+ +   +GD   E +LK   + +  EK  V++ D +
Sbjct: 72  QIGGKGRIIACDL-----LPMDPIVGVDFLQGDFRDELVLKTLLERVGDEKVQVVMSDMA 126

Query: 123 PNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFDKAF 182
           PN+SG  +VD  R++ L  +AL     +L  GG+FVVKVFQG  F++Y++ +   F    
Sbjct: 127 PNMSGTPEVDIPRAMYLVELALDMCRDILAPGGSFVVKVFQGVGFDEYLREIRSLFTTVK 186

Query: 183 TTKPRASRDESAEVYVI 199
             KP ASR  S EVY++
Sbjct: 187 IRKPDASRARSREVYIV 203