Pairwise Alignments

Query, 258 a.a., RlmE family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 216 a.a., Ribosomal RNA large subunit methyltransferase E from Acinetobacter radioresistens SK82

 Score =  143 bits (361), Expect = 3e-39
 Identities = 78/202 (38%), Positives = 120/202 (59%), Gaps = 3/202 (1%)

Query: 1   MGKKDKRWVLQRKNDHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGW 60
           + K  + W+ +  +D +   A++  YR+RA YKL ++ EK+ LIK    VVDLG APG W
Sbjct: 10  LSKSSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSW 69

Query: 61  LQAARDIVGEDGFIVGIDLQTVKPLPHDNIIAIKGDMTKEEILKQAKDLL-PEKPDVIIC 119
            Q A  +VG+ G ++  D+  +  L   ++  ++GD  +EE+ ++  ++L   + DV+I 
Sbjct: 70  SQIAGKLVGDKGLVIASDILPMDALA--DVTFLQGDFREEEVFEKLLNILNGRQVDVVIS 127

Query: 120 DASPNISGVWDVDHVRSLELTTMALMTATKMLKKGGNFVVKVFQGDLFEKYVQLVSEYFD 179
           D +PN SG   VD  R + L  +AL  A K+L   G FVVKVFQG  F+++ + V + FD
Sbjct: 128 DMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFD 187

Query: 180 KAFTTKPRASRDESAEVYVIGK 201
              T KP ASR  S EV++IG+
Sbjct: 188 VLKTVKPAASRARSKEVFLIGQ 209