Pairwise Alignments

Query, 264 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 95.9 bits (237), Expect = 7e-25
 Identities = 67/265 (25%), Positives = 128/265 (48%), Gaps = 20/265 (7%)

Query: 1   MNNKVLILIIGLIGAVLAFSGCVSNSEAQSTEDNSWKNVEESGVLKVGLCAAWPPFESRN 60
           MN    ++ +GL+     F+     ++AQ+ E            L V   A + PF   N
Sbjct: 1   MNRIRRVISLGLVATAATFA---LGAQAQNRE------------LTVASSATYAPFAFEN 45

Query: 61  EKTGEIEGFDVDLANALGEELGIEVEIVDAEWQALLGGLSKGDYDTLITCMSKKEASVEN 120
            K  +I GFD+D+ NA+ ++ G++++IV+  +  + G L+ GD D +I+ ++  +   ++
Sbjct: 46  -KDKQIVGFDIDIINAIAKQQGLKIKIVNTPFTGIFGALNNGDVDLVISGVTINDKRKQS 104

Query: 121 VEMSEVYYELNDVIVVRNDNNEINNVSDLSGKIVGVQLGSGSEQAVDALSG--IKEIKRY 178
            + +  Y+    +I +   N+++ ++ DL+GK + V   S ++       G    +I+R+
Sbjct: 105 YDFTPPYFAARQLIALPK-NSKVTSLKDLAGKKIAVVSASTADDIASREFGKTSPDIRRF 163

Query: 179 NYNPEAMIDLQNNRSDAVVVGYTYVLSEISKYPDLKVLDTPIASAE-IVMVQKEGAKELT 237
              P  + +L     DA +     +   +++ PDLK +D      E   +V K+G K L 
Sbjct: 164 ESTPLIISELAGGGVDAAMGDNGVIAYRVAQNPDLKTIDDKSFPEEGFGIVVKKGDKALL 223

Query: 238 VKLNEALSKIKENGKYDEIQDKWLS 262
            KL   L+ I+ +G Y  I  KW +
Sbjct: 224 DKLTAGLAAIRADGSYVTIYKKWFN 248