Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

 Score =  137 bits (346), Expect = 4e-37
 Identities = 112/414 (27%), Positives = 195/414 (47%), Gaps = 27/414 (6%)

Query: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASAA 68
           +A + +   K+RS++T LGI+IG+A+V+ +++ G+  + +V +Q++ + ++ + L     
Sbjct: 8   LAFRAINRHKMRSFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPGQG 67

Query: 69  --QGSDDDEDPELTDMDVLIL-NGISDIEYVDVRVSTRNEVRFAGGRETATITGVDPAVW 125
             +G      P   + D+  + N ++ +  V   V +     + G   + T+ G   A +
Sbjct: 68  FGRGGGGPRPPNFKEADLTAIENQLTGVRAVAPVVQSSGTAIYEGNNWSTTVYGTTSA-Y 126

Query: 126 SQMTDEELSAGRLLQASDSNA----VIISYYTATEAFDREIGINQMITIGNKQFKVVGIL 181
           SQ+    +S GRL    +  A     II     T  F     I + + I     +VVG+L
Sbjct: 127 SQVQSWNVSEGRLFMPDEEEAGKSVCIIGNTVRTNLFQGNDPIGKRMRIKGVSCQVVGVL 186

Query: 182 EEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDVNQ 241
                 GFG       + V MP + V      D     IS+    V D      Y+    
Sbjct: 187 ATRGQGGFGDQ----DDVVVMPIKFVQRRFTGDR---DISQIMVAVDDA-----YDSATV 234

Query: 242 TTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGISLIVGVTG 301
             +LE + ++    +   EDN +    +  + +      ++LT  ++ +A ISL+VG  G
Sbjct: 235 QDSLEQLMRERRKIKAGAEDNFN-VFDTKQISDTLTGTTTILTQIVAAVAAISLLVGGIG 293

Query: 302 ISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQIIV 361
           I N M  +V E+TREIGI  AIGA  +++++ F+  + ++  +GG +GLV+  I S    
Sbjct: 294 IMNIMLVSVTERTREIGIRLAIGAVAREVLMQFLVEAIVLSCMGGLIGLVIALIASV--- 350

Query: 362 WFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
             IA  M   + F   +   +IA   S A G++ G  PA  A+ L P++ALR E
Sbjct: 351 -GIAPLMKVPFTFDPQVN--LIAFLFSAAIGVVFGYFPARRAASLNPIDALRHE 401