Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 650 a.a., MacB family efflux pump subunit from Serratia liquefaciens MT49

 Score =  141 bits (355), Expect = 7e-38
 Identities = 114/421 (27%), Positives = 202/421 (47%), Gaps = 42/421 (9%)

Query: 7   FNMASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTAS 66
           F MA   + S +LR+ +T+LGI+IGIASV+++++ G      V   +N M +  + +   
Sbjct: 260 FKMALLAMASQRLRTLLTMLGIIIGIASVVSVVALGKGSQQQVLANINAMGTSTLEVYPG 319

Query: 67  AAQG---SDDDEDPELTDMDVLILNGISDIEYVDVRVSTRNEVRFAGGRETATITGVDP- 122
              G   S   +    TD D L   G   +  V   VS+    R+     + T+ GV   
Sbjct: 320 KDFGDMRSAAVQTLRATDADALAQQGY--VHSVTPTVSSSTTFRYGNQSVSGTVNGVGEQ 377

Query: 123 -------AVWSQMTDEELSAGRLLQASDSNAVIISYYTATEAFDREIG-INQMITIGNKQ 174
                  ++ S M     S  +L+Q +     +I   T  + F      + ++I +G+  
Sbjct: 378 YFLVRGYSIDSGMAFNRHSVDQLMQEA-----VIDENTRNKLFPHGANPLGEVIMLGSLP 432

Query: 175 FKVVGILEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFT 234
            +++G+  + ++ GFG    ++   V++PY       L      SI+ +           
Sbjct: 433 CRIIGVAAKKQS-GFGSDENLN---VWIPYTTAMKRMLGQSYLKSITVR----------- 477

Query: 235 LYEDVNQTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGIS 294
           + +D++ T+A + + + L+  RH  +D   F + + ++ +  E+  + LT  +S IA IS
Sbjct: 478 VNDDIDLTSAEDGVTR-LLSQRHGGKDF--FVMNTDSIRQTIEKTTATLTLLVSMIALIS 534

Query: 295 LIVGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGT 354
           L+VG  G+ N M  +V E+TREIG+  A+GA+  DIM  F+  + ++ L+GG LG++L  
Sbjct: 535 LVVGGIGVMNIMLVSVTERTREIGVRMAVGARASDIMQQFLIEAVLVCLLGGTLGVLLSL 594

Query: 355 ILSQIIVWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRS 414
            +  +   F       ++  V S +S+V A  CS   G+I G  PA  A+ + P+ AL  
Sbjct: 595 GIGVVFSQF-----SDNFTMVYSTESIVAAFICSTLIGVIFGFFPARRAAGMDPIHALER 649

Query: 415 E 415
           E
Sbjct: 650 E 650