Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 648 a.a., ABC transporter nucleotide binding/ATPase from Agrobacterium fabrum C58

 Score =  158 bits (400), Expect = 4e-43
 Identities = 126/412 (30%), Positives = 205/412 (49%), Gaps = 34/412 (8%)

Query: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASAA 68
           MA   + + K+RS +T+LGI+IGIASV AI + G      +   ++ + ++  T+   A 
Sbjct: 260 MAGAAIWAHKMRSLLTMLGIIIGIASVAAISALGAGSQQQILSSISSLGTN--TIEVRAG 317

Query: 69  QGSDDDEDPELTDMDVLILNGISDIEYVDV---RVSTRNEVRFAGGRETATITGVDPAVW 125
           +G  D E  ++  +       + +  YVD     V+T   V+ A     A++TGV  A +
Sbjct: 318 KGFGDLEAGKIRTLVPADAEALVNQPYVDSVTPTVTTSVTVKRAAVAVNASVTGVG-ADF 376

Query: 126 SQMTDEELSAGRLLQASD----SNAVIISYYTATEAF-DREIGINQMITIGNKQFKVVGI 180
            ++   EL+ G+L  A D    S  V+I    A + F DR   + Q+I +G    +VVG+
Sbjct: 377 FRVRGLELAHGQLFDAQDVIAYSQNVVIDASAARDLFPDRVNPVGQVILLGTMPARVVGV 436

Query: 181 LEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDVN 240
            + + + G      + + TVY PY  V    L                D I   + +DV+
Sbjct: 437 TKRENSFG----PAVDTLTVYAPYTTVMGRMLGRPN-----------VDGITVRIRDDVD 481

Query: 241 QTTALENIQKKLMMSRHVNEDNMDFTIRSPTVFEGPEQIISMLTTFLSFIAGISLIVGVT 300
               +E    +L+  RH  +D   F   S T+ E  E     LT  +S +A ISLIVG  
Sbjct: 482 PGN-VEAAVTRLIERRHGAKDF--FLTNSATIRETIETTTQTLTLLISSVAVISLIVGGI 538

Query: 301 GISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTILSQII 360
           G+ N M  +V E+T+EIG+  A+GA+  DI+  F+  + ++ LVGG +G++L   +S + 
Sbjct: 539 GVMNIMLVSVTERTKEIGVRVAVGARRSDILSQFLIEAVMVCLVGGLMGIMLALGISALF 598

Query: 361 VWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEAL 412
                  +   ++ + S  S+++A  CS   GI+ G +PA NA+KL P+EAL
Sbjct: 599 -----NLLSPDFKMIFSPGSIIVAFACSTLIGIVFGFLPARNAAKLDPIEAL 645