Pairwise Alignments

Query, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 402 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  140 bits (354), Expect = 5e-38
 Identities = 118/419 (28%), Positives = 198/419 (47%), Gaps = 36/419 (8%)

Query: 9   MASKMVKSSKLRSWITILGIVIGIASVIAIISAGDYLSTSVSDQLNDMLSDEITLTASA- 67
           +A + +  + LRS++T+LG+VIG+A+VIA+++ G+  +  V  +L+ + ++ + +     
Sbjct: 8   LALRAISRNLLRSFLTVLGVVIGVAAVIAMVTIGNGTTEQVKSELSRLGTNMLFVRPGQF 67

Query: 68  AQGSDDDEDPELTDMDV-LILNGISDIEYVDVRVSTRNEVRFAGGR--ETATITGVDPAV 124
             G    E     D DV  I N IS I  V  +  +       GG+  +T+ I   +  +
Sbjct: 68  GPGRASTEAKRFDDRDVEAIRNQISGIRAVAPQNRSSAATVIFGGKNHQTSVIGTTNDYL 127

Query: 125 WSQMTDEELSAGRLLQASDSNA----VIISYYTATEAFDREIGINQMITIGNKQFKVVGI 180
            +Q  D  ++ GR  Q ++        II      E F  E  + Q I + N    V+G+
Sbjct: 128 IAQ--DWTIALGRDFQPAEDRGGQIGCIIGETVRQELFGAENPVGQTIRVSNISCPVIGV 185

Query: 181 LEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEIIFTLYEDVN 240
           L      G   +G    +T+ MP + ++   +    + S           I+ +  + V+
Sbjct: 186 LARKGQSG---LGDDQDDTIIMPLK-IHQRRIGGTTTIS----------SIMVSAQDGVS 231

Query: 241 QTTALENIQKKLMMSRHVN---EDNMDFTIRSPT-VFEGPEQIISMLTTFLSFIAGISLI 296
                 ++Q  L   R +N   ED  DFT+   T +        ++LT  L  +A +SL+
Sbjct: 232 TAKVQSDLQNLLRERRRINIGRED--DFTVNDMTQIASAMTGTTTLLTGLLGAVAAVSLL 289

Query: 297 VGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGGFLGLVLGTIL 356
           VG  GI N M  +V E+TREIGI  AIGA  K ++  F+  + ++   GG +G++ G  L
Sbjct: 290 VGGIGIMNIMLVSVTERTREIGIRLAIGALEKQVLTQFLVEAVMLSAFGGIVGILTGLGL 349

Query: 357 SQIIVWFIAQSMDSSYQFVLSIKSVVIAIGCSLAAGIIAGIIPAYNASKLKPVEALRSE 415
           +  +V F+      +  FV S   + +A   S A G+I G  PA  A+ L P+EALR E
Sbjct: 350 AYSVVSFL------NVPFVTSPSIIFLAFAFSAAIGVIFGYFPARRAASLSPIEALRHE 402