Pairwise Alignments

Query, 415 a.a., formylmethanofuran dehydrogenase subunit C from Methanococcus maripaludis S2

Subject, 256 a.a., hypothetical protein from Methanococcus maripaludis S2

 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 88  IIVEGDAGFHVGCEMKGGEILVKGDVKPWAGREMEGGTLHIFGNAGDHLGGCYRGRWEGM 147
           IIV G  G  +G  MKG +++V G+     G  M+ G + I G++GD  G         M
Sbjct: 55  IIVNGVPGGDLGMFMKGPKVVVNGNADHAPGNTMDEGFVVIHGSSGDVTG-------HSM 107

Query: 148 LGGTIIVEGDAGNNVGDGMVDGK-----IVVNGNVRAFCGIRLNGGVL 190
            GG + V+G+ G   G  M + K     +V+ G  + F G  + GG++
Sbjct: 108 RGGKVYVQGNVGYRSGIHMKEYKYKFPVLVIGGAAKDFLGEYMAGGII 155



 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 62  KEDMVIKIAGDAGNVKLIGFQMTAGKIIVEGDAGFHVGCEMKGGEILVKGDVKPWAGREM 121
           ++D+ I + G  G    +G  M   K++V G+A    G  M  G +++ G      G  M
Sbjct: 50  RKDLTIIVNGVPGGD--LGMFMKGPKVVVNGNADHAPGNTMDEGFVVIHGSSGDVTGHSM 107

Query: 122 EGGTLHIFGNAGDHLGGCYRGRWEGMLGGTIIVEGDAGNNVGDGMVDGKIVVNGNVRAFC 181
            GG +++ GN G +  G +   ++      +++ G A + +G+ M  G I++N N+    
Sbjct: 108 RGGKVYVQGNVG-YRSGIHMKEYKYKF-PVLVIGGAAKDFLGEYMAGG-IILNLNMDQED 164

Query: 182 GIRLNGGVLYVG--GNAIRAVGVEMKKGTIIVAGKIKNF 218
              + G ++  G  G  I   G+ +K   + +A  IK F
Sbjct: 165 SENIEGRMIATGIHGGVIYVRGI-VKSSQLGIAADIKEF 202



 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 147 MLGGTIIVEGDAGNNVGDGMVDGKIVVNGNVRAFCGIRLNGGVLYVGGNAIRAVGVEMKK 206
           M G  ++V G+A +  G+ M +G +V++G+     G  + GG +YV GN     G+ MK+
Sbjct: 69  MKGPKVVVNGNADHAPGNTMDEGFVVIHGSSGDVTGHSMRGGKVYVQGNVGYRSGIHMKE 128

Query: 207 -----GTIIVAGKIKNFAPGFISTGVV 228
                  +++ G  K+F   +++ G++
Sbjct: 129 YKYKFPVLVIGGAAKDFLGEYMAGGII 155



 Score = 40.4 bits (93), Expect = 6e-08
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 151 TIIVEGDAGNNVGDGMVDGKIVVNGNVRAFCGIRLNGGVLYVGGNAIRAVGVEMKKGTII 210
           TIIV G  G ++G  M   K+VVNGN     G  ++ G + + G++    G  M+ G + 
Sbjct: 54  TIIVNGVPGGDLGMFMKGPKVVVNGNADHAPGNTMDEGFVVIHGSSGDVTGHSMRGGKVY 113

Query: 211 VAGKIKNFAPGFISTGVVSDYETGLSGLALPGKLIGFNGD 250
           V G +     G+ S   + +Y+     L + G    F G+
Sbjct: 114 VQGNV-----GYRSGIHMKEYKYKFPVLVIGGAAKDFLGE 148