Pairwise Alignments

Query, 759 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 867 a.a., ATP-dependent RNA helicase SrmB from Xanthobacter sp. DMC5

 Score = 91.7 bits (226), Expect = 2e-22
 Identities = 105/393 (26%), Positives = 158/393 (40%), Gaps = 66/393 (16%)

Query: 46  LPDNFEEYLLKKNKKLYTHQYSALENVRIGKNILLTTSTASGKTLSFNLPILETL----- 100
           LP+ F  +   +      HQ   +     G ++LL   T +GKTL+  LP L  L     
Sbjct: 8   LPEPFAGWFRARGWAPRAHQLDLISAAESGHSVLLIAPTGAGKTLAGFLPTLIELSRPQK 67

Query: 101 ----------------------------QNDKDAT---ALYIYPTKALTNDQLNNLKNLE 129
                                       Q ++ A+    LYI P KAL  D   NL+   
Sbjct: 68  NARKPAAPPVAEAGDTATGEAAVPFARWQAERPASPLHTLYISPLKALAVDIARNLEAPV 127

Query: 130 NELNITLKPEIYDGDTPNSKR-KSIREKSRIILTNPHELHQVLQYNPKWMSFFKNLKYIV 188
            E+ + ++ E   GDTP S+R +  R+   I+LT P ++  +L         F  LK +V
Sbjct: 128 EEMGLPIRVETRTGDTPASRRQRQRRDPPHILLTTPEQISLLLASKDA-EHLFSGLKRVV 186

Query: 189 IDEAHT-YRGIFGSNISFLIRRLRRICEDYGSYPQFILASATLANAKEFSEKLVGLDFRV 247
           +DE H       G  +S  + RLR I        Q +  SAT+A   +    LV  D   
Sbjct: 187 LDELHALVTSKRGDLLSLALARLRAIAPGL----QCVGLSATVAEPDDLRRYLVPQD--- 239

Query: 248 IDKDGSPKNKKYFVFYNTLKNEIS------ESSWYS-----SAINILELCMKYGLQTIGF 296
            +    P      +       +IS         W S     +   I EL     L  + F
Sbjct: 240 -EDAAEPALADLVIAAGGAAPDISMLESRARMPWASHTAQHAFAEIYELIGANKLSLV-F 297

Query: 297 TLSRKMAELI--TIWTKKSLGNNILSRKISSYRSGFTPEERRDIESRLKNGDLRAVTSTN 354
             +R  AE +   +W       N L+  I+ +      E+RR +E+ +  G L+AV +T+
Sbjct: 298 VNTRWQAEFLFQELWR-----INDLNYPIALHHGSLAVEQRRRVEAAMAAGKLKAVVATS 352

Query: 355 ALEVGIDIGSLDSVIMYGYPGTLMSLWQQAGRA 387
           +L++GID G +D VI  G P     L Q+ GRA
Sbjct: 353 SLDLGIDWGDVDLVINVGAPKGASRLMQRIGRA 385