Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  150 bits (380), Expect = 2e-40
 Identities = 127/559 (22%), Positives = 249/559 (44%), Gaps = 52/559 (9%)

Query: 187 DIVNNDDYWVDSLKERTGNEATIFLKN----VRISTTV-QTNGQDATGTKCSDE--VYNI 239
           +++NN+   VD  K+ +G  AT+F+++    +RIST++ + +G  A GT    +   Y  
Sbjct: 107 EVLNNNFEDVDEFKQMSGGVATVFVRSGEDFIRISTSLTKQDGNRAIGTVLDRQGPAYQR 166

Query: 240 ITNHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTG------------------IPK 281
           + + Q Y+G A +    Y+T+YSP+ D  G V+ ++F G                  I +
Sbjct: 167 VLSGQTYIGRAVLFDRSYMTQYSPVRDSSGQVIAVLFIGFDYTDAQNAQFENLKRFRIGQ 226

Query: 282 APFVAVITDTRNEII-------IISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNG 334
              +A++ + +  ++       +   + ++L +      GR      EE    +  F  G
Sbjct: 227 TGSLALLDEQKRWLVPPAGVQALDQAVPVMLDLAKTPGKGRFWADKNEEFYSVSVPFDGG 286

Query: 335 NYDYKTTVKTGDELQELSD-SFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNR---V 390
            +    ++   +      D     +  +V  ++  +      L + L  + D++ +   +
Sbjct: 287 PWAVVASMPKAEIRSVTWDVGIRLVIGSVLAMLLAVGATVWLLRSKLAPLGDLVRQAEAL 346

Query: 391 AKGDFTARADESR--ENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAE 448
             GD + R + S   E   L ++ N     ++ ++  +R+  E +N + Q +     GA 
Sbjct: 347 GAGDLSVRLNVSSHDEIGQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGAY 406

Query: 449 ETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSE 508
           E   Q +   T +A A  + SA     ++ + +T               + ++E  + + 
Sbjct: 407 EGMEQQSGEITSMAGAVEEFSATSLNIADNMGSTE--------------RLAQENAQQTR 452

Query: 509 TGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASI 568
            G   ++ A S ++ I   ++     I  LG+  ++I  + G+I  IAEQT LLALNA+I
Sbjct: 453 IGRNSMQEASSSLEHIAAALNSTATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAAI 512

Query: 569 EAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDK 628
           EAARAG+ G+GFAVVA E+++LA   +++ ++I+  I+ + +   + I    +G   + +
Sbjct: 513 EAARAGEQGRGFAVVADEVRNLASRTREATDEISGMIQSIQQETGNAISTMERGNVLMQE 572

Query: 629 GVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTAT 688
           G+    +V  AL +I E    +  +   I    Q  S        N Q IA  + E    
Sbjct: 573 GLSRNADVASALARIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSIALANSEQREV 632

Query: 689 AEEVTASTEELNSIIEEIR 707
              +  + +EL ++   +R
Sbjct: 633 VSNLAITAKELETLAAGLR 651



 Score = 35.4 bits (80), Expect = 9e-06
 Identities = 26/146 (17%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 574 GDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAI 633
           G   + F  +   + ++   I+K+ E++N   + ++       +   +   E+     A+
Sbjct: 364 GQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGAYEGMEQQSGEITSMAGAV 423

Query: 634 DEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVT 693
           +E +   L I +++  +       +  AQ  ++ T     + QE ++  E   A      
Sbjct: 424 EEFSATSLNIADNMGST-------ERLAQENAQQTRIGRNSMQEASSSLEHIAAALNSTA 476

Query: 694 ASTEELNSIIEEIRGIAEEVTQVAER 719
                L    +EI GI   +T +AE+
Sbjct: 477 TVINTLGQRSQEIGGIVGVITSIAEQ 502