Pairwise Alignments
Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2
Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417
Score = 114 bits (285), Expect = 1e-29
Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 30/323 (9%)
Query: 386 VMNRVAKGDFTARADESRENN--NLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDE 443
V VA GD T + L++A+ + N+ D I+ + E ++
Sbjct: 224 VAQGVASGDLTGEISVCGRDEPARLQQALKSMQENLRDTIRRISES-----------SNQ 272
Query: 444 LKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEI 503
L A E + V E AT+ QS ++++++ + +EV S A T ++S E
Sbjct: 273 LASASEELSCVTEDATR---GLHQQSQEIEQAATAVNQMTAAVEEVASNAVATSQASRES 329
Query: 504 KENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA 563
++ G E+V+ + ++++ + + ++ L + I++V +I+ IAEQT LLA
Sbjct: 330 DRIAQRGREQVQQTVVSIEALATDVTDNVTQVEDLAQKVYGISKVLDVIRSIAEQTNLLA 389
Query: 564 LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGV--------------N 609
LNA+IEAARAGDAG+GFAVVA E+++LA ++S ++I I G+ N
Sbjct: 390 LNAAIEAARAGDAGRGFAVVADEVRALAHRTQQSTQEIEQMISGIQQGTDQAVSSMQQSN 449
Query: 610 KRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTE 669
R T+D+ +++ A +N+ L I + + A + N +
Sbjct: 450 TRARSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQAAVAREVDRNLMNIRDLAH 509
Query: 670 GALKNAQEIAALSEEFTATAEEV 692
A + +A S + + A ++
Sbjct: 510 QTSTGANQTSAASHDLSRLAVDL 532
Score = 59.7 bits (143), Expect = 4e-13
Identities = 66/352 (18%), Positives = 141/352 (40%), Gaps = 36/352 (10%)
Query: 286 AVITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTG 345
+V + +R +I + +L L++I +A+ R I P+ + K + +G+ + +V
Sbjct: 183 SVFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEISVCGR 242
Query: 346 DELQELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESREN 405
DE L + M EN+++ ++ + +LA+ +S V +G ++ E +
Sbjct: 243 DEPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRG-LHQQSQEIEQA 301
Query: 406 ----NNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQV 461
N + A+ SN + RE + ++V+ + E AT V + TQV
Sbjct: 302 ATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQV 361
Query: 462 AEAASD---------------QSAKLQESSEELENTYEG---------AKEVYSAAEETV 497
+ A + L + +E G A EV + A T
Sbjct: 362 EDLAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQ 421
Query: 498 KSSEEIKE-------NSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTG 550
+S++EI++ ++ V ++ + +R +S ++ G +++ + INE
Sbjct: 422 QSTQEIEQMISGIQQGTDQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERNL 481
Query: 551 LIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDIN 602
+I +EQ +A D + A++ + + ++ + D+N
Sbjct: 482 VIASASEQQAAVAREVDRNLMNIRDLAHQTSTGANQTSAASHDLSRLAVDLN 533
Score = 48.1 bits (113), Expect = 1e-09
Identities = 52/294 (17%), Positives = 126/294 (42%), Gaps = 31/294 (10%)
Query: 444 LKGAEETATQVAEAATQVAEAASDQSAKLQESSEEL-ENTYEGAKEVYSAAEETVKSSEE 502
LK A+ A+ + +++ D+ A+LQ++ + + EN + + + ++ + +SEE
Sbjct: 222 LKVAQGVAS--GDLTGEISVCGRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEE 279
Query: 503 IK---ENSETGV----EKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDI 555
+ E++ G+ +++E A + + +T ++E+ + + ++ + + ++
Sbjct: 280 LSCVTEDATRGLHQQSQEIEQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQ 339
Query: 556 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDT 615
+QT + SIEA A ++ + E++ + V I+ ++ + + T
Sbjct: 340 VQQTVV-----SIEA---------LATDVTDNVTQVEDLAQKVYGISKVLDVIRSIAEQT 385
Query: 616 IDLGLKGKDEVDKG-------VIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENT 668
L L E + + DEV + ++S E I+GI+ G A +
Sbjct: 386 NLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQSTQEIEQMISGIQQGTDQAVSSM 445
Query: 669 EGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTK 722
+ + A+ +++ EE+ ++ +N I +E+ VA V +
Sbjct: 446 QQSNTRARSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQAAVAREVDR 499