Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 686 a.a., Protein PilJ from Pseudomonas putida KT2440

 Score =  124 bits (312), Expect = 1e-32
 Identities = 101/383 (26%), Positives = 175/383 (45%), Gaps = 25/383 (6%)

Query: 349 QELSDSFNKMAENVKNLMKTMDMDKV--------ELATLLTNVSDVMNRVAKGDFTARAD 400
           Q L D  + +A   +NL     +D V         LA+++  +  VM R         A+
Sbjct: 290 QTLLDEASHLANGFENLAGGRTLDTVGGYVLGLLALASIIL-IGLVMVRTTNRQLRETAE 348

Query: 401 ESRENNNLEKAINTAVSNVAD----LIKELREE-----VELLNIQIQKVEDELKGAEETA 451
           ++  N      +   +  +AD    +   + E+      + +N  + ++ D +     +A
Sbjct: 349 KNERNQQAIMRLLDEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSA 408

Query: 452 TQVAEA-------ATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIK 504
            QVA A       A Q+A+A+  Q+A++ E+SE + +  E    V + A E+ K +E   
Sbjct: 409 VQVAAAVQDTQNTARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAERSV 468

Query: 505 ENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLAL 564
             +  G E V N I+ M +I   I +  K IK LGE  ++I ++  LI DIA+QT +LAL
Sbjct: 469 AIANKGNEVVHNTINGMDNIREQIQDTAKRIKRLGESSQEIGDIVSLIDDIADQTNILAL 528

Query: 565 NASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKD 624
           NA+I+A+ AG+AG+GFAVVA E++ LAE    +   I   +  +    ++ +    +   
Sbjct: 529 NAAIQASLAGEAGRGFAVVADEVQRLAERSSSATRQIEALVRTIQADTNEAVISMEQTTA 588

Query: 625 EVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEE 684
           EV +G     +   AL +I+      A  I+ I   AQ  + +          I  ++ +
Sbjct: 589 EVVRGARLAQDAGVALAEIEGVSQNLADLIHSISDAAQLQTSSAGQISHTMAVIQQITAQ 648

Query: 685 FTATAEEVTASTEELNSIIEEIR 707
            +A +     S   L  +  E+R
Sbjct: 649 TSAGSGATADSIRHLARMASEMR 671



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 70/345 (20%), Positives = 132/345 (38%), Gaps = 37/345 (10%)

Query: 403 RENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVA 462
           R+N ++  A    V ++  +   L E V  L ++ +KV + L  +   A QVA A  Q+ 
Sbjct: 131 RKNTDIILASEQTVLSLHQVAATLAETVPQLQVEYEKVVEILLQSGAPANQVAVAQRQLL 190

Query: 463 EAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEE--------IKENSETGVEKV 514
            A        +     +     G      AA+   + +          I  N+   V +V
Sbjct: 191 LA--------ERILGSVNTVLAGDDSAAQAADAFGRDAGRFGQVLEGMINGNATIQVTRV 242

Query: 515 ENAISR---------MQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALN 565
           E+A +R          Q +   +DE+ ++   L    +    +  L + + ++   LA  
Sbjct: 243 EDADARARLAEIAELFQFVAGSVDEILETSPELFRVREAAGNIFSLSQTLLDEASHLANG 302

Query: 566 -ASIEAARAGDAGKGFAV----VASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGL 620
             ++   R  D   G+ +    +AS I      ++ +   +  T E  N+R    I   L
Sbjct: 303 FENLAGGRTLDTVGGYVLGLLALASIILIGLVMVRTTNRQLRETAE-KNERNQQAIMRLL 361

Query: 621 KGKDEVDKG--VIAIDEVNDALLKIKESVNESAVKING----IKHGAQNASENTEGALKN 674
              +E+  G   + +    D    I +S+N S  ++      I H A   +   +     
Sbjct: 362 DEIEELADGDLTVTVSVTEDFTGAIADSINYSVDQLRDLVATINHSAVQVAAAVQDTQNT 421

Query: 675 AQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAER 719
           A+++A  SE   A   E + +  ++   I+ +   A E  +VAER
Sbjct: 422 ARQLAKASEHQAAQISEASEAVGDMVESIDRVSAHAYESAKVAER 466