Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 492 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  114 bits (286), Expect = 9e-30
 Identities = 109/407 (26%), Positives = 180/407 (44%), Gaps = 42/407 (10%)

Query: 322 EELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMKTM----DMDKVELA 377
           E   +G +   NG+       ++    Q   D F+  A  V  LM  M     +    L 
Sbjct: 106 ENPPRGAQVLRNGDQQLAVLAQSPSLRQVFFDRFSNYAVCVLILMLAMLGASQLLIRFLL 165

Query: 378 TLLTNVSDVMNRVAK-GDFTARA-----DESREN----NNLEKAINTAVSNVADLIKELR 427
           + L  + DVM  V K GD +AR      DE  +     N ++   +  VS VA    +L 
Sbjct: 166 SQLNTLKDVMLHVEKTGDLSARVPLASGDEVGQMAGAFNAMQSTYHRVVSTVAHSAAQLD 225

Query: 428 EEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAK 487
                L   +  V   + G +    Q A A  ++       SA +   ++     + GA 
Sbjct: 226 SGAARLAASMSDVRHGMLGQQSETDQAATAINEM-------SATVHHIAQ-----HAGAT 273

Query: 488 EVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINE 547
              S   +T+  S       +  V +V+++IS + S    + +  + I+ L ED +KIN 
Sbjct: 274 RDLSQTADTLAGS------GQAVVSRVQDSISGLSS---GVQQTAEMIRQLAEDSQKING 324

Query: 548 VTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEG 607
           V  +I  IAEQT LLALNA+IEAARAGD G+GFAVVA E+++LA+ ++ S ++I   +  
Sbjct: 325 VVSVIHSIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRNLAKRVQTSTDEITTMVSA 384

Query: 608 VNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESV---NESAVKINGIKHGAQNA 664
           +     D ++   +   + D  V    E  +AL +I  +V    ES  +I          
Sbjct: 385 LQSGTRDAVEFMQESSYKADDCVRQAQEAGEALAEITGAVAQMRESNTQIAVAAEQQSQV 444

Query: 665 SENTEGALKNAQEIAALSEEFT----ATAEEVTASTEELNSIIEEIR 707
           +E    A+ + +++   + + T     T+ E+     ELN  I +++
Sbjct: 445 AEEMNRAVVSIRDVTERTVQQTVGSATTSSELATLAGELNKAIGQLK 491



 Score = 58.5 bits (140), Expect = 8e-13
 Identities = 57/303 (18%), Positives = 127/303 (41%), Gaps = 23/303 (7%)

Query: 430 VELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEV 489
           +  L  Q+  ++D +   E+T     + + +V  A+ D+  ++  +   +++TY     V
Sbjct: 161 IRFLLSQLNTLKDVMLHVEKTG----DLSARVPLASGDEVGQMAGAFNAMQSTYH---RV 213

Query: 490 YSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVT 549
            S    +    +         +  V + +   QS T   D+   +I  +      I +  
Sbjct: 214 VSTVAHSAAQLDSGAARLAASMSDVRHGMLGQQSET---DQAATAINEMSATVHHIAQHA 270

Query: 550 GLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVED---INHTIE 606
           G  +D+++    LA +     +R  D+  G   ++S ++  AE I++  ED   IN  + 
Sbjct: 271 GATRDLSQTADTLAGSGQAVVSRVQDSISG---LSSGVQQTAEMIRQLAEDSQKINGVVS 327

Query: 607 GVNKRIDDTIDLGLKGKDEVDKG-------VIAIDEVNDALLKIKESVNESAVKINGIKH 659
            ++   + T  L L    E  +         +  DEV +   +++ S +E    ++ ++ 
Sbjct: 328 VIHSIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRNLAKRVQTSTDEITTMVSALQS 387

Query: 660 GAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAER 719
           G ++A E  + +   A +    ++E      E+T +  ++     +I   AE+ +QVAE 
Sbjct: 388 GTRDAVEFMQESSYKADDCVRQAQEAGEALAEITGAVAQMRESNTQIAVAAEQQSQVAEE 447

Query: 720 VTK 722
           + +
Sbjct: 448 MNR 450