Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  123 bits (309), Expect = 2e-32
 Identities = 90/344 (26%), Positives = 170/344 (49%), Gaps = 20/344 (5%)

Query: 374 VELATLLT-NVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVEL 432
           V LA LLT ++   +NR         A ++  + +L KAI     +  D    L E +  
Sbjct: 204 VLLAWLLTRSIVTPLNRAVL------AAQTIADGDLSKAIEV---DGKDEPARLLEALAA 254

Query: 433 LNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSA 492
           +   ++K  +++ G+   ATQ+  AA +++    + S  LQ+ + E+E       E+ +A
Sbjct: 255 MQTNLRKTIEQIAGS---ATQLGAAAEELSAVTEEASRGLQQQNNEIEQAATAVNEMTAA 311

Query: 493 AEETVKSSEEIKENSET-------GVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKI 545
            EE  +++    E S         G ++V   +  +Q++T+ +    + I+ L   G+ I
Sbjct: 312 VEEVARNAVSTSEASNQSTHAAREGRDQVVKTVDAIQTMTHDVQNTAQMIEGLAAQGRDI 371

Query: 546 NEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTI 605
            +V  +I+ IAEQT LLALNA+IEAARAG+AG+GFAVVA E+++LA    +S ++I   +
Sbjct: 372 GKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMV 431

Query: 606 EGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNAS 665
            G+     + +    +        +        AL +I +S+++   +   I   ++  +
Sbjct: 432 AGIQNGTGEAVSSMQQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVIASASEEQA 491

Query: 666 ENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGI 709
           + +    +N   I  L+ +  A A + +A+T EL+ +  ++  +
Sbjct: 492 QVSREVDRNLVNIRDLATQSAAGANQTSAATHELSRLAVDLNAM 535



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 626 VDKGVIAIDEVNDALLKIKESVN---ESAVKINGIKHGAQNASENTEGALKNAQEIAALS 682
           +++ V+A   + D  L     V+   E A  +  +     N  +  E    +A ++ A +
Sbjct: 218 LNRAVLAAQTIADGDLSKAIEVDGKDEPARLLEALAAMQTNLRKTIEQIAGSATQLGAAA 277

Query: 683 EEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKS 724
           EE +A  EE +   ++ N+ IE+      E+T   E V + +
Sbjct: 278 EELSAVTEEASRGLQQQNNEIEQAATAVNEMTAAVEEVARNA 319



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 36/194 (18%)

Query: 552 IKDIAEQTG-----LLALNASIEAARAGDAGKGF------AVVASEIKSLAEEI------ 594
           IK+  +Q G     L+ +N +   A A  AG+ +       ++ + I +LA  +      
Sbjct: 152 IKEGTDQMGEQLNKLIGMNTAGARAAATKAGENYDSAITGIIIVAVIAALATVLLAWLLT 211

Query: 595 KKSVEDINHTIEGVNKRIDDTIDLGLK--GKDEVDKGVIAIDEVNDALLKIKESVNESAV 652
           +  V  +N  +       D  +   ++  GKDE  + + A+  +   L K  E +  SA 
Sbjct: 212 RSIVTPLNRAVLAAQTIADGDLSKAIEVDGKDEPARLLEALAAMQTNLRKTIEQIAGSAT 271

Query: 653 KINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEE 712
           ++                    A+E++A++EE +   ++     E+  + + E+    EE
Sbjct: 272 QLGAA-----------------AEELSAVTEEASRGLQQQNNEIEQAATAVNEMTAAVEE 314

Query: 713 VTQVAERVTKKSSQ 726
           V + A   ++ S+Q
Sbjct: 315 VARNAVSTSEASNQ 328