Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 748 a.a., twitching motility protein PilJ from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (347), Expect = 1e-36
 Identities = 97/359 (27%), Positives = 175/359 (48%), Gaps = 16/359 (4%)

Query: 349 QELSDSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNL 408
           Q +++S    AE+ +   K ++ D  + A L   + + +  VA+GD T  A  + +    
Sbjct: 397 QSVAESQRLAAESQQQDAKRVN-DANQAAIL--RLMNELQTVAEGDLTQEATVTED---- 449

Query: 409 EKAINTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQ 468
                     +AD +    EE+  L   +  V+       +T + V   +T++  A+++Q
Sbjct: 450 ------ITGAIADSVNYTVEELRSL---VGNVQATATRVAQTTSAVESTSTELLAASTEQ 500

Query: 469 SAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVI 528
             +++E+ + + +  +   +V   A+E+   +    + +E+G++ V++AI  M +I + I
Sbjct: 501 LREIRETGQSVLDMAQRINQVSGQAQESATVARASLQAAESGLQAVQDAIGGMNAIRDQI 560

Query: 529 DELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIK 588
            E  K IK LGE  ++I E+T LI DI EQT +LALNA+I+AA AG+AG+GF+VVA E++
Sbjct: 561 QETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQ 620

Query: 589 SLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVN 648
            LAE    +   I+  ++ +     D +    +    V +G    D    AL +I     
Sbjct: 621 RLAERSADATRQISALVKAIQTDTQDAVAAMERSTQGVVEGAKLSDNAGTALSEIDRVSR 680

Query: 649 ESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
             A  I  I   A   +++      N Q I A++E+             EL+++ EE+R
Sbjct: 681 RLAELIEQISDAASREADSANEVAGNIQHIFAVTEQTGEGTRSTAQQVRELSAMAEELR 739



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 399 ADESRENNNLEKAINTAVSN-VADLIKELREEVELLNIQ------IQKVEDELKGAEETA 451
           AD +R+ + L KAI T   + VA + +  +  VE   +       + +++   +   E  
Sbjct: 627 ADATRQISALVKAIQTDTQDAVAAMERSTQGVVEGAKLSDNAGTALSEIDRVSRRLAELI 686

Query: 452 TQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKSSEEIKEN 506
            Q+++AA++ A++A++ +  +Q      E T EG +       E    +EE++++
Sbjct: 687 EQISDAASREADSANEVAGNIQHIFAVTEQTGEGTRSTAQQVRELSAMAEELRQS 741