Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  234 bits (598), Expect = 8e-66
 Identities = 157/524 (29%), Positives = 269/524 (51%), Gaps = 61/524 (11%)

Query: 6   KKIGTKLLIFMILCAIIPLMVVGGVSTNKITEEMQIQGDNSVNDNLNIFQESIENVIVEF 65
           K++GTKL+I+ I+ A+IP++++G VST+ I  EM  Q    +ND+LN  +  +   + + 
Sbjct: 8   KRLGTKLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKI 67

Query: 66  ETTTSYTASLDTFSELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSSDNVQT- 124
            +   Y  S D     L N++   L   A   K +S  D V F D  GN+++ S++  T 
Sbjct: 68  SSLNKYIISNDNTITSLKNNNTAELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSDVTG 127

Query: 125 --NLKPVISKLLSNEVQSSFEI------------------ISGSEAS-KYSDYKVNNIND 163
             + + +  K++++   +S E+                  I G+E S  YSD    ++ D
Sbjct: 128 DNSYEDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDIKGTEDSINYSD----SVQD 183

Query: 164 -ALAICVVAPVYH-SGELVGTVTLVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTVQ 221
            A+A+  + P+Y  +G+L+G     DI+N D   VD++K+ + +  TIFL  VR+ST VQ
Sbjct: 184 SAMALVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKDATTIFLDGVRVSTNVQ 243

Query: 222 TNGQDATGTKCSDEVYN-IITNHQDYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIP 280
            NG  A GT  S+EVYN ++ + + Y G A V+   Y+T Y PI D D  ++G++F G P
Sbjct: 244 DNGGRAIGTLVSEEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNKIIGMLFVGTP 303

Query: 281 KAPFVAVITDTRNEIIIISLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKT 340
           ++ F+A+  D RN+  ++ L+GLL++++++    R I KP+E+LK+G E   NG YD K 
Sbjct: 304 ESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKV 363

Query: 341 TVKTGDELQELSDSFNKMAENVK-----------------NLMKTMDMDKV--------E 375
            V + DE  EL+ +FNKMA  +                  N +K +D  K         E
Sbjct: 364 IVDSDDEFGELAKAFNKMATQINISDDKLKKHAEELKISYNELKELDKLKSELIAVVSHE 423

Query: 376 LATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNI 435
           L T LT++   +  V  G   A       N++ +K +  A  N+  L + +   ++L  I
Sbjct: 424 LRTPLTSIKGYVELVLDGTMGA------INDSQKKCLQVADDNIVRLRRLIESMLDLSKI 477

Query: 436 QIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEEL 479
           +  ++E   +      + V +    +   A++++ KL +  E++
Sbjct: 478 ERGELE-MYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVEDI 520



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 28/196 (14%)

Query: 497 VKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 556
           +K  E++K+    G E V N     + I +  DE G+  K   +   +IN     +K  A
Sbjct: 341 IKPLEQLKQ----GAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQINISDDKLKKHA 396

Query: 557 EQTGLLALNASIEAARAGDAGKG--FAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDD 614
           E+     L  S    +  D  K    AVV+ E+++    IK  VE +   ++G    I+D
Sbjct: 397 EE-----LKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELV---LDGTMGAIND 448

Query: 615 TIDLGLKGKDEVDKGVIAIDEVNDALLKI-----------KESVNESAVKINGIKHGAQN 663
           +    L+  D+    ++ +  + +++L +           +E VN  ++  + I++    
Sbjct: 449 SQKKCLQVADD---NIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPL 505

Query: 664 ASENTEGALKNAQEIA 679
           A+E      K  ++IA
Sbjct: 506 ATEKNIKLNKEVEDIA 521