Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 614 a.a., ATP-binding protein from Methanococcus maripaludis S2

 Score =  317 bits (811), Expect = 1e-90
 Identities = 176/501 (35%), Positives = 285/501 (56%), Gaps = 37/501 (7%)

Query: 8   IGTKLLIFMILCAIIPLMVVGGVSTNKITEEMQIQGDNSVNDNLNIFQESIENVIVEFET 67
           IGTKLLIF I+  +IP++++  VST+ I++ M    ++ ++ NL I  E +++V+VEF+T
Sbjct: 9   IGTKLLIFSIIIVLIPIVMMSYVSTDTISDLMTSNQESELDINLGILNERMDSVLVEFDT 68

Query: 68  TTSYTASLDTFSELLVNDDKEVLYDFAEKMKKSSEVDLVAFTDKNGNIISSS---DNVQT 124
            T+YTA L      + N+DK+ L DFA  ++  S +DL  FTD +GN+I +S   DN + 
Sbjct: 69  MTAYTADLPVVVNAVKNNDKDTLQDFANGLEDQSWIDLAVFTDADGNVICASYGDDNAE- 127

Query: 125 NLKPVISKLLSNEVQSSFEIISGSEASKYSDYKVNNINDALAICVVAPVYHSGELVGTVT 184
            +   + KLL      +++I+   EASKYS+Y+++  NDAL I  VAP+Y    L+GTVT
Sbjct: 128 -ISSYVKKLLEKNTIYAYDILPNEEASKYSEYELDG-NDALTIFTVAPIYDGNSLIGTVT 185

Query: 185 LVDIVNNDDYWVDSLKERTGNEATIFLKNVRISTTVQTNGQDATGTKCSDEVYNIITNHQ 244
            VDI+N DDYWVD +KE TG+EA+I+L NVRISTT   +G D  G    +++Y  ++  Q
Sbjct: 186 YVDIMNKDDYWVDRVKEVTGDEASIYLNNVRISTTCIKDGVDFVGELADEDIYETVSKKQ 245

Query: 245 DYVGTANVLGSEYITKYSPIEDKDGNVVGIIFTGIPKAPFVAVITDTRNEIIIISLLGLL 304
           D   T  + G  Y+ KYSPI + DG V+G+   G PK+PF A++     +I  I+   L+
Sbjct: 246 DVRSTVTINGVPYLAKYSPIYNIDGEVIGMTCVGTPKSPFTALLNSVIQKIFFIAFSSLI 305

Query: 305 LSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKN 364
           +++ +A+   +KI   I++LK   E FG GNYD + ++ TGDEL+EL++SFNKMA+ +  
Sbjct: 306 IAVFVAVILNKKIVDSIKKLKNSAESFGRGNYDERASIDTGDELEELAESFNKMADEIGK 365

Query: 365 LMKTMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIK 424
             K +  D   L T                     DE +E +NL+  I + VS+      
Sbjct: 366 SDKKLKSDAHTLKTSF-------------------DELKEVDNLKSEILSIVSH------ 400

Query: 425 ELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYE 484
           ELR  +  +   ++ ++D      ETA +++E   +     S+ S +L+  ++ + +   
Sbjct: 401 ELRTPLTAILGYVELLKD------ETAGKLSEKQKEFISVISENSDRLKRITDNMSDLVT 454

Query: 485 GAKEVYSAAEETVKSSEEIKE 505
              ++     + +   +E+ +
Sbjct: 455 VDNKILDIKRDRINLKKEVND 475



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 31/186 (16%)

Query: 484 EGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDG- 542
           +  K++ ++AE   + + + + + +TG E  E A    +S   + DE+GKS K L  D  
Sbjct: 320 DSIKKLKNSAESFGRGNYDERASIDTGDELEELA----ESFNKMADEIGKSDKKLKSDAH 375

Query: 543 ------KKINEVTGLIKDIAE------QTGLLALNASIEAARAGDAGK---GFAVVASEI 587
                  ++ EV  L  +I        +T L A+   +E  +   AGK         S I
Sbjct: 376 TLKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVI 435

Query: 588 KSLAEEIKKSVEDINHTIEGVNKRID---DTIDLGLKGKDEV--------DKGVIAIDEV 636
              ++ +K+  ++++  +   NK +D   D I+L  +  D +         K ++ +++V
Sbjct: 436 SENSDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVLLEDV 495

Query: 637 NDALLK 642
           ++  +K
Sbjct: 496 DNLDIK 501