Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 775 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  123 bits (308), Expect = 4e-32
 Identities = 113/451 (25%), Positives = 204/451 (45%), Gaps = 53/451 (11%)

Query: 308 LIALYTGRKITKPIEELKKG-TEEFGNGNYDY--------KTTVKTGDELQELSDSFNKM 358
           + A   GR I K +E+ K G T   G    DY        +  +       +L+++   M
Sbjct: 224 IAAALGGRDIIKAVEDGKGGRTAVLGRAVKDYSGKPLGVAEIAMDASHYAAQLAEARRTM 283

Query: 359 AENVKNLMKTMDMDKVELATLLTN----VSDVMNRVAKGDFTARA---DESRENNNLEKA 411
           A  +   +    +  V L+  +T     +S  M+R+AK DF       D + E  ++ +A
Sbjct: 284 AGLILGAILVSIVLSVLLSRTITRPVLAMSAAMDRIAKRDFAVDIHGLDRNDEIGHMARA 343

Query: 412 INTAVSNVADLIKELREEVELLNIQIQKVEDELK-GAEETATQVAEAATQVAEAA---SD 467
           +      V +   EL    +   ++++K +  LK G +     + EAA Q  EA    + 
Sbjct: 344 VEVVQKEV-ERTAELEVAQQRNLVELEKGQKSLKDGMQLQLEGIVEAAMQSNEAGVVLAR 402

Query: 468 QSAKLQESSEELENTYEGAKEVYSAAEETVKSSE-------EIKENSETGVEKVENAISR 520
            S  ++ +SE+ ++     +++ ++     +SSE       + +  ++ GV     A   
Sbjct: 403 MSGSVRRASEQSQSIASAIEQLVASVGTIAQSSEIAAGEASDAEAAAKEGVSATAAARRA 462

Query: 521 MQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGF 580
           M  +   + ++G  I+ L     +I  +   I+ IA QT LLALNA+IEAARAG+AGKGF
Sbjct: 463 MDGLLEAVSDVGGKIEALSNASDQIAAIIDQIEAIAGQTNLLALNATIEAARAGEAGKGF 522

Query: 581 AVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDAL 640
           AVVA E+K+LA +  K+  DI   IEG+   ++     G +   E  +G           
Sbjct: 523 AVVAGEVKTLANQTAKATVDIRARIEGLVSDMN-----GARASMERSRG----------- 566

Query: 641 LKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELN 700
                + N+    +  +  G +  +   +G  +   +IA +  +  A A EV+++T E+ 
Sbjct: 567 -----AANDGMAAVGQVTGGLEAIAGRIDGVTRRMHDIAGILSQQNAAATEVSSATGEIA 621

Query: 701 SI----IEEIRGIAEEVTQVAERVTKKSSQF 727
           S+    +EEI  +   +T+ A  + +++  F
Sbjct: 622 SLSEHNLEEIAQVLGAMTEAASVLDRRAEDF 652