Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 986 a.a., PAS domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  122 bits (305), Expect = 1e-31
 Identities = 106/342 (30%), Positives = 169/342 (49%), Gaps = 24/342 (7%)

Query: 390 VAKGDFT--ARADESRENNNLEKAINTAVSNVADLIKELREEV----ELLNIQIQKVEDE 443
           +A+GDFT   +A+E RE       +    + +A  ++E  E      E L  ++  + + 
Sbjct: 388 IARGDFTHEIQAEEVREFQRSSALLRAMEAKLAYAVQERAENARKAQEKLRSEMLNLTEL 447

Query: 444 LKGAEETATQVAEAATQVAEAASDQSAKLQESSEELEN---TYEGAKEVYSAAEETVK-S 499
           L+G  E    VAE +TQ AE   + +A L  ++EEL +   T   A E+ S   +TV  +
Sbjct: 448 LEG--EVDNTVAEISTQ-AERLKEGAAHLLATAEELRDKSETVARAIEITSGNVQTVAGA 504

Query: 500 SEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQT 559
           +EE++ +S     +++++    ++  + +DE   S+  L E   +I +V  LI+ IA QT
Sbjct: 505 TEELEASSREITARIQSSSEHSEAARHRVDEASSSVGTLTEATARIGDVVSLIQAIAGQT 564

Query: 560 GLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLG 619
            +LALNA+IEAARAGDAGKGFAVVASE+K LAE+     ED    I  VN +  D     
Sbjct: 565 RMLALNATIEAARAGDAGKGFAVVASEVKGLAEQ----TED---AIGRVNAQARDIESTT 617

Query: 620 LKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIA 679
            K    V+     I ++     +I  S +E       I   A  A+++T      A ++ 
Sbjct: 618 QKAVATVEAVADTIRDMEQIAGQIAASADEQRAATGEIMSSAVQAADHTRDVADAAADVL 677

Query: 680 ALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVT 721
             SE+   TA +V+    EL+ ++    G  +    V  R +
Sbjct: 678 KASEQTGVTARKVS----ELSMLVNHDIGALQRRLNVILRTS 715



 Score = 33.1 bits (74), Expect = 7e-05
 Identities = 31/159 (19%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 568 IEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDLGLKGKDEVD 627
           I+A    +  +  A++ +    LA  +++  E+     E +   + +  +L L+G  EVD
Sbjct: 397 IQAEEVREFQRSSALLRAMEAKLAYAVQERAENARKAQEKLRSEMLNLTEL-LEG--EVD 453

Query: 628 KGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKNAQEIAALSEEFTA 687
             V    E++    ++KE           ++  ++  +   E    N Q +A  +EE  A
Sbjct: 454 NTVA---EISTQAERLKEGAAHLLATAEELRDKSETVARAIEITSGNVQTVAGATEELEA 510

Query: 688 TAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSSQ 726
           ++ E+TA  +  +   E  R   +E +     +T+ +++
Sbjct: 511 SSREITARIQSSSEHSEAARHRVDEASSSVGTLTEATAR 549