Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 807 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  128 bits (322), Expect = 1e-33
 Identities = 115/433 (26%), Positives = 186/433 (42%), Gaps = 62/433 (14%)

Query: 299 SLLGLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGD-ELQELSDSFNK 357
           +++ L L++L++    R I  P+  +     E   GN       KT D   +E +D    
Sbjct: 302 AIIALGLAVLLSWLIARSIVTPLSAMTGAMTELSKGN-------KTVDIPARERTDEIGA 354

Query: 358 MAENVKNLMK-TMDMDKVELATLLTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAV 416
           MA+ ++   + T+ MDK++       V             A AD     +++      +V
Sbjct: 355 MAQAMEIFKENTLKMDKMQAEQEAQKVK------------AEADRKAALHHMADTFEESV 402

Query: 417 SNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESS 476
             V   +     E       +Q    ++ G   TA + +  AT VA AA+  SA ++   
Sbjct: 403 GKVVQTVTSAATE-------LQGASSQMAG---TAHETSAQATTVASAATQASANVET-- 450

Query: 477 EELENTYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIK 536
                       V +A EE   S  EI +  E        A    ++ TN        ++
Sbjct: 451 ------------VAAATEELAASISEIAKQVERSQAVANRAEQEAENTTN-------QVR 491

Query: 537 MLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKK 596
            L ++  +I EV  LI DIA QT LLALNA+IEAARAGDAGKGFAVVA+E+K+LA +  K
Sbjct: 492 ALSDNVGRIGEVVVLINDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTAK 551

Query: 597 SVEDINHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKING 656
           + ++I   I+ V +   + +    K  D + K    I E+ +    +  +V E       
Sbjct: 552 ATDEIASQIKAVQEGTGNAV----KAIDTISK---VISEMGEISASVASAVQEQTAATGE 604

Query: 657 IKHGAQNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQV 716
           I    + A+  T     N   +   + E    AE+++ S  +L+   E +RG   EV + 
Sbjct: 605 IARNVEQAAAGTAEVSSNINSVEQAARETGHAAEQISESATDLSKQAEFLRG---EVGRF 661

Query: 717 AERVTKKSSQFKI 729
             +V    +  +I
Sbjct: 662 LHQVRADKADMRI 674



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 55/290 (18%)

Query: 487 KEVYSAAEETVKSSEEIKEN------------SETGVEKVENAISRMQSITNVIDEL-GK 533
           K+  +  EE VK +E + +             +ET  +   +A +++ + TN +D+L  K
Sbjct: 197 KDAQTEIEEFVKEAETLTKRLRNPERKRLAAEAETNAKAYRDAFTQVAAATNALDKLVFK 256

Query: 534 SIKML-----------------GEDGKKINEVTGLIK-DIAEQTG-LLALNASI------ 568
            +  L                   D +K +   G+ + + A  TG ++AL  ++      
Sbjct: 257 DMAALAVQFADLADQTVHSQDQAMDQQKADTEAGMARSNTATWTGAIIALGLAVLLSWLI 316

Query: 569 -------EAARAG---DAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRIDDTIDL 618
                   +A  G   +  KG   V    +   +EI    + +    E   K      + 
Sbjct: 317 ARSIVTPLSAMTGAMTELSKGNKTVDIPARERTDEIGAMAQAMEIFKENTLKMDKMQAEQ 376

Query: 619 -GLKGKDEVDKGVI---AIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGALKN 674
              K K E D+        D   +++ K+ ++V  +A ++ G        +  T      
Sbjct: 377 EAQKVKAEADRKAALHHMADTFEESVGKVVQTVTSAATELQGASSQMAGTAHETSA---Q 433

Query: 675 AQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKS 724
           A  +A+ + + +A  E V A+TEEL + I EI    E    VA R  +++
Sbjct: 434 ATTVASAATQASANVETVAAATEELAASISEIAKQVERSQAVANRAEQEA 483