Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 674 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  125 bits (315), Expect = 5e-33
 Identities = 83/335 (24%), Positives = 166/335 (49%), Gaps = 26/335 (7%)

Query: 380 LTNVSDVMNRVAKGDFTARADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQK 439
           L  V++++   + GD T R D+S ++            N   LI  L+E +  +N++   
Sbjct: 351 LYRVNELLTVASSGDLTHRLDDSAQDE-----FGLLARNCNTLIGNLKELITAINVR--- 402

Query: 440 VEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELENTYEGAKEVYSAAEETVKS 499
                      A Q+A A+ Q +   +  +  +Q+   ++        E++S ++  V++
Sbjct: 403 -----------AEQLAAASEQTSAVTAQTTHSIQDQKSQIGQVATATTEMHSTSQLVVQN 451

Query: 500 SEEIKENSETGVEKVENAISRMQSITNVIDELGKSIK-------MLGEDGKKINEVTGLI 552
           +E+          + EN         N I+ L + ++        L +D   I  +  +I
Sbjct: 452 AEDTLSQIRHADAEAENVRQISLENKNTIEILSRDVQEAADVINKLHQDSASIGGILDVI 511

Query: 553 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINHTIEGVNKRI 612
           + +A+QT LLALNA+IEAARAG+ G+GFAVVA E+++LA   ++S ++IN  IE +    
Sbjct: 512 RGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTQEINAMIEVLQAGA 571

Query: 613 DDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEGAL 672
           +  + +  +GK++    V   ++   AL  I ++V+++    + I+  A+  +  ++   
Sbjct: 572 EKAVSVMNQGKEQTAACVAQTEKATQALDIISDAVHKAHDVSSQIEQSAREQNTVSQEIS 631

Query: 673 KNAQEIAALSEEFTATAEEVTASTEELNSIIEEIR 707
           +  + I  ++EE TA A++ + S+ E+  + EE++
Sbjct: 632 EKLETIVGIAEETTAGAQQTSESSHEVARLAEELQ 666



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 87/472 (18%), Positives = 190/472 (40%), Gaps = 93/472 (19%)

Query: 204 GNEATIFLKNV--RISTTVQT-NGQDATGTKCSDEVYNIITNHQDYVGTANVLGSEYITK 260
           GNE  + ++ V  ++S  +QT  G+D +GT   D++ +++ N  + +   + +   ++ +
Sbjct: 214 GNEVDLVVEKVVTQLSDMMQTAGGRDDSGTL--DDINDLVNNAINAIKANDGVVQLHVDR 271

Query: 261 YSPIED-------KDGNVV-------GIIFTGIPKAPFV-----AVITDTRNEIIIISLL 301
                D        D N+         ++     KA  V       I      +I++ ++
Sbjct: 272 LERRNDAEKALNASDSNIAQAVVALENLLNLADKKASHVESQVNGAIATGNTFVIVVVII 331

Query: 302 GLLLSILIALYTGRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAEN 361
            + ++  I   T R IT+P+  + +      +G+  ++      DE   L+ + N +  N
Sbjct: 332 SIAVAAFIGYVTVRAITRPLYRVNELLTVASSGDLTHRLDDSAQDEFGLLARNCNTLIGN 391

Query: 362 VKNLMKTMDMDKVELAT---------------------------------------LLTN 382
           +K L+  +++   +LA                                        ++ N
Sbjct: 392 LKELITAINVRAEQLAAASEQTSAVTAQTTHSIQDQKSQIGQVATATTEMHSTSQLVVQN 451

Query: 383 VSDVMNRVAKGDFTAR--ADESRENNNLEKAINTAVSNVADLIKELREEVELLNIQIQKV 440
             D ++++   D  A      S EN N  + ++  V   AD+I +L ++    +  I  +
Sbjct: 452 AEDTLSQIRHADAEAENVRQISLENKNTIEILSRDVQEAADVINKLHQD----SASIGGI 507

Query: 441 EDELKG-AEET-------ATQVAEAATQ------VAEAASDQSAKLQESSEELENTYEGA 486
            D ++G A++T       A + A A  Q      VA+     +++ QES++E+    E  
Sbjct: 508 LDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTQEINAMIE-- 565

Query: 487 KEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKIN 546
             + + AE+ V    + KE +   V + E A   +  I++ + +       + +  ++ N
Sbjct: 566 -VLQAGAEKAVSVMNQGKEQTAACVAQTEKATQALDIISDAVHKAHDVSSQIEQSAREQN 624

Query: 547 EVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 598
            V+  I +  E    +A   +  A +  ++       + E+  LAEE+++S+
Sbjct: 625 TVSQEISEKLETIVGIAEETTAGAQQTSES-------SHEVARLAEELQQSI 669