Pairwise Alignments

Query, 729 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 682 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  129 bits (325), Expect = 4e-34
 Identities = 113/460 (24%), Positives = 202/460 (43%), Gaps = 67/460 (14%)

Query: 281 KAPFVAVITDTRNEIIIISLLGLLLSILIALYTG-RKITKPIEELKKGTEEFGNGNYDYK 339
           KA     +T T   +I ++  G+L      LY G R+++ PI  + +      +GN D  
Sbjct: 172 KAGIDGFVTTTFWLVITVTGSGILAGAAFGLYIGARQLSAPIRRVSEVMNAVADGNLDAD 231

Query: 340 TT-VKTGDELQELS---DSFNKMAENVKNLMKTMDMDKVELATLLTNVSDVMNRVAKGDF 395
              +   DE+ E++   + F K    V+ +       + +   L   ++ V++  A GDF
Sbjct: 232 VPYLGQNDEIGEMAAAVEVFKKNGREVRRMNAQETAMRAKSDDLQAGMAVVVDAAAGGDF 291

Query: 396 TARADESRENNNLEK----------AINTAVSNVADLIK--------------------E 425
           + R ++   ++NL +           ++  VS  + +I+                    E
Sbjct: 292 SRRINKDYGDDNLNRFATTINALLIGVDNGVSETSRVIEGLARGDLTEKMDGDFRGVFAE 351

Query: 426 LREEVELLNIQIQKVEDELKGAEE----TATQVAEAATQVAEAASDQSAKLQESSEELEN 481
           L+E V     ++++   E++G+ E     A ++  AA  +++    Q+A L+E+S  L+ 
Sbjct: 352 LKENVNQTLTKLRETMREVRGSTEGISGNANELRSAADDLSKRTEQQAAALEETSAALDE 411

Query: 482 TYEGAKEVYSAAEETVKSSEEIKENSETGVEKVENAISRMQSITNVIDELGKSIKMLGED 541
                +     A+E      E K+ +E     V +A+S M  I +               
Sbjct: 412 ITAVVRNSTDRAQEASAMVAETKQKTEESASVVRDAVSAMDRIEHA-------------- 457

Query: 542 GKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDI 601
            ++I+++  +I +IA QT LLALNA +EAARAG+AGKGFAVVA E++ LA+    + +DI
Sbjct: 458 SREISQIINVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSATAAKDI 517

Query: 602 NHTIEGVNKRIDDTIDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGA 661
              I               K  +EV +GV  +     AL +I+  V      I+ I   A
Sbjct: 518 KALI--------------TKSGEEVGRGVSLVQRTGSALSEIETRVLAINEHIHSIATAA 563

Query: 662 QNASENTEGALKNAQEIAALSEEFTATAEEVTASTEELNS 701
           +  S           ++  +++   A  EE +A+T +L+S
Sbjct: 564 REQSTGLHEVNTAINQMDEVTQRNAAMVEETSAATHKLSS 603



 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 27/238 (11%)

Query: 510 GVEKVENAISRMQSITNVIDE--LGKSIKMLGEDGKKINEVTGLIKDIAEQTG--LLALN 565
           G  ++   I R+  + N + +  L   +  LG++ + I E+   + ++ ++ G  +  +N
Sbjct: 205 GARQLSAPIRRVSEVMNAVADGNLDADVPYLGQNDE-IGEMAAAV-EVFKKNGREVRRMN 262

Query: 566 ASIEAARA--GDAGKGFAVV--ASEIKSLAEEIKKSVED---------INHTIEGVNKRI 612
           A   A RA   D   G AVV  A+     +  I K   D         IN  + GV+  +
Sbjct: 263 AQETAMRAKSDDLQAGMAVVVDAAAGGDFSRRINKDYGDDNLNRFATTINALLIGVDNGV 322

Query: 613 DDTIDL--GLKGKDEVDKGVIAIDEVNDALLKIKESVNESAVKINGIKHGAQNASENTEG 670
            +T  +  GL   D  +K      +      ++KE+VN++  K+   +   +    +TEG
Sbjct: 323 SETSRVIEGLARGDLTEK---MDGDFRGVFAELKENVNQTLTKL---RETMREVRGSTEG 376

Query: 671 ALKNAQEIAALSEEFTATAEEVTASTEELNSIIEEIRGIAEEVTQVAERVTKKSSQFK 728
              NA E+ + +++ +   E+  A+ EE ++ ++EI  +    T  A+  +   ++ K
Sbjct: 377 ISGNANELRSAADDLSKRTEQQAAALEETSAALDEITAVVRNSTDRAQEASAMVAETK 434



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 44/213 (20%), Positives = 86/213 (40%), Gaps = 34/213 (15%)

Query: 371 MDKVELATL-LTNVSDVMNRVA---------KGDFTARADES--------RENNNLEKAI 412
           MD++E A+  ++ + +V++ +A          G   ARA E+        +E   L +  
Sbjct: 451 MDRIEHASREISQIINVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRS 510

Query: 413 NTAVSNVADLIKELREEVELLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKL 472
            TA  ++  LI +  EEV      +Q+    L   E     + E    +A AA +QS  L
Sbjct: 511 ATAAKDIKALITKSGEEVGRGVSLVQRTGSALSEIETRVLAINEHIHSIATAAREQSTGL 570

Query: 473 QESSEELENTYEGAKEVYSAAEETVKSSEEIKENSE----------TGVE------KVEN 516
            E +  +    E  +   +  EET  ++ ++   ++           G E      ++E 
Sbjct: 571 HEVNTAINQMDEVTQRNAAMVEETSAATHKLSSEADHLVTLVTRFNVGTETAQRSHRIEQ 630

Query: 517 AISRMQSITNVIDELGKSIKMLGEDGKKINEVT 549
           ++  M + T  +   G++  +     K +N V+
Sbjct: 631 SLRPMTASTGPVAVSGRTAAVSSPARKLMNSVS 663