Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTL----EL 214
           RD  ++ +L+  G RV+E+++L  E  +   G  R+   K  +ER V    + +      
Sbjct: 135 RDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMG-KGSKERLVPMGEEAIVWVERY 193

Query: 215 LKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQ-NKRYV 273
           ++   S      P D LF S   E + +        +TF     ++K + K+    K   
Sbjct: 194 MRDARSELLGGRPSDVLFPSLRGEQMTR--------QTFWH---RIKHQAKVAGIGKALS 242

Query: 274 VHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SRQRKEQM 320
            H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H +R R + M
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDM 290