Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 303 a.a., Site-specific tyrosine recombinase XerD from Variovorax sp. SCN45

 Score = 60.8 bits (146), Expect = 4e-14
 Identities = 67/306 (21%), Positives = 131/306 (42%), Gaps = 16/306 (5%)

Query: 16  AVTKTPAMNKWISVFREEREFDGIKENTIIGDLTKLGVFLEFAQQRLEKEPDELYKTDFI 75
           A   TP ++ +I     E   DG+ +NT+      L +F ++  +          K   +
Sbjct: 5   AAAPTPDIDDFIDALWLE---DGLSKNTLAAYRRDLALFAQWLGEHSGGATLGTAKETDL 61

Query: 76  KFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYD 135
           + +       +    + NR   + K +YR    +     R  ++   R   +R   +   
Sbjct: 62  QAYMGARLSNRGKATSANRRLTVFKRYYRWALRER----RIAADPSIRLMPARQMPRAIK 117

Query: 136 AITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLR 195
            ++E+ ++ ++A   + +S   +RD  ++ +++ +G RVSE++ LK  D    +G  R+ 
Sbjct: 118 TLSEKQVDDLLAAP-DVESPLGLRDRAMLELMYASGLRVSELVALKAIDMSLNDGVLRVL 176

Query: 196 NTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGR 255
             K  +ER V    +    ++      + +E +  +       +L   A    +TR    
Sbjct: 177 G-KGSKERLVPFGGEARRWIE-----RYLEESRPAILDGQQTPDLFVTARGAGMTRVMFW 230

Query: 256 AVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH-SR 314
            + K K       +     H+LRH  A  LLN GV +  V+ +LGH  + TT  Y+H +R
Sbjct: 231 IIVK-KHATAAGIHVPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVAR 289

Query: 315 QRKEQM 320
           +R +Q+
Sbjct: 290 ERLKQL 295