Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 337 a.a., Integron integrase IntI1 from Sphingobium sp. HT1-2

 Score = 61.6 bits (148), Expect = 3e-14
 Identities = 66/283 (23%), Positives = 112/283 (39%), Gaps = 53/283 (18%)

Query: 64  KEPDELYKTDFIKFFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKR 123
           + P  L  ++   F ++L  ERK+S +T  +    L  FY      +    ++    R  
Sbjct: 51  RHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRP- 109

Query: 124 FSSSRIEVKHYDAITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYE 183
             S R+ V     +   D  + I    E +        +  ++L+ TG R+SE L L+ +
Sbjct: 110 --SRRLPV-----VLTPDEVVRILGFLEGEHR------LFAQLLYGTGMRISEGLQLRVK 156

Query: 184 DCDFENGEFRLRNTKSHEERKV-------------------------------VCSSDTL 212
           D DF++G   +R  K  ++R +                               V   D L
Sbjct: 157 DLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDAL 216

Query: 213 ELLKCLASYNFKKEPKDYLFQS---TNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQN 269
           E     A +++   P  ++F     +     G +   +   +TF RA  +  E+  I   
Sbjct: 217 ERKYPRAGHSW---PWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGI--T 271

Query: 270 KRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312
           K    H+LRH  A  LL  G  I  V+++LGH  + TT+ Y+H
Sbjct: 272 KPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 314