Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 4e-13
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 17/168 (10%)

Query: 159 RDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLRNTKSHEERKVVCSSDTLELLKCL 218
           RD  ++ +L+  G RV+E+++L  +  +   G  R+   K  +ER V    + +  L+  
Sbjct: 135 RDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMG-KGSKERLVPMGEEAVVWLERY 193

Query: 219 ASYN----FKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDKLKEEEKIQQ-NKRYV 273
                       P D LF S   E + +        +TF     ++K   ++   +K   
Sbjct: 194 QRDGRAELLNGRPSDVLFPSQRGEQMTR--------QTFWH---RIKHHARVAGIDKPLS 242

Query: 274 VHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQML 321
            H+LRH  A  LLN G  + VV+ +LGH  L TT  Y+H  + + Q L
Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQL 290