Pairwise Alignments

Query, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

Subject, 336 a.a., site-specific integrase from Paraburkholderia sabiae LMG 24235

 Score = 68.2 bits (165), Expect = 3e-16
 Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 6/238 (2%)

Query: 77  FFNYLEKERKISKNTQNRYFNLLKVFYRAFKLDNFMDFRDESNERKRFSSSRIEVKHYDA 136
           F ++L  +R +S  TQN     L  F+R +      +   +  +       R        
Sbjct: 67  FLDHLTNDRHVSVRTQNHRLAALHAFFR-YVQSEVPEQLSQCQQVLAIPLRRQPRPSVGY 125

Query: 137 ITEQDLNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFEN-GEFRLR 195
           ++ + L  ++A+  + +++   RD V++ +L+DTGARV E+++L   D   +   + RL 
Sbjct: 126 LSREYLAQLLAQP-DLRTTEGRRDAVMLSVLYDTGARVQELIDLNAGDVRLDTPSQVRLM 184

Query: 196 NTKSHEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGR 255
             K  + R V     T+ELL+     N   +P ++  +   Q   G    R+ +     +
Sbjct: 185 G-KGRKLRVVPLMDSTVELLRQHRRDN-NLDPPEHADKPLFQNRRGTRLSRSGVRYLLQK 242

Query: 256 AVDKLKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHS 313
            V  ++        +R   HSLRH + + LL  GVP++++++ LGH  ++TT  Y+ +
Sbjct: 243 YVIPVRRSHP-DFTQRVSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARA 299